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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_835#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 792 fasta sequence
[ACTGACAGTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTCCCCGCTGCATCCAGCTCCGGATTCCGACTGTCGAAAGAGCATCTGGTGGTGGCTGTGCCCGTCGCAGTCATCTCGGCCATCGGAGGGTTCCTTGTCAGCCAGTACCTGAACAGGCGTTGCTGTACGAAGGGCCTGGTGAACACGTCCATCAGTAAAGACAGCCCCAAAGTGGTCCACAGCTTTGACATGGAGGACATTGGTTCTAAAGCTGTCTACTGCCGCTGCTGGAAGTCAAAGAAGTTCCCTTACTGTGACGGGTCCCACTCCAAACACAACGACGAGACCGGGGACAACGTCGGACCGCTCATCATCAAGAAGAAGGACACTTAAGCCAAGAGGCTGCGTAACAGCTTTGCACCTGCCTTCTCCCATCAGCTCCAGTTCATTGTGATGTTTGTCTAGAATAATTGATCCTTAACTTAATAGGGCAAAAACTCTAAAAATCCTAATCAAAAAAGGTTCCAAATGTCTGCGCTGCGCCATTGTTGACCGCCGTGGAATCAAAGGTCATTTCAGGACAGATAAGATGAGGGACTTTGACTCCAGACGCAAAGGTATTCTGACTTTTGCTGCAGGAGGTGTTAAAGCGGGACGCGGCCTGCAACCCTTAATGTGCAGCACATGGGTGTAAAATAACGCACTTATAATTTGCCTTAGTCGGTGTTCTGAAGCCTGCGGCTGTGTGTTATAACCAATCCGATCACACGTGACCAGCGCGAATGTCCGTTTCTG]
[+] EMBL CA846233 [ACTGACAGTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTCCCCGCTGCATCCAGCTCCGGATTCCGACTGTCGAAAGAGCATCTGGTGGTGGCTGTGCCCGTCGCAGTCATCTCGGCCATCGGAGGGTTCCTTGTCAGCCAGTACCTGAACAGGCGTTGCTGTACGAAGGGCCTGGTGAACACGTCCATCAGTAAAGACAGCCCCAAAGTGGTCCACAGCTTTGACATGGAGGACATTGGTTCTAAAGCTGTCTACTGCCGCTGCTGGAAGTCAAAGAAGTTCCCTTACTGTGACGGGTCCCACTCCAAACACAACGACGAGACCGGGGACAACGTCGGACCGCTCATCATCAAGAAGAAGGACACTTAAGCCAAGAGGCTGCGTAACAGCTTTGCACCTGCCTTCTCCCATCAGCTCCAGTTCATTGTGATGTTTGTCTAGAATAATTGATCCTTAACTTAATAGGGCAAAAACTCTAAAAATCCTAATCAAAAAAGGTTCCAAATGTCTGCGCTGCGCCATTGTTGACCGCCGTGGAATCAAAGGTCATTTCAGGACAGATAAGATGAGGGACTTTGACTCCAGACGCAAAGGTATTCTGACTTTTGCTGCAGGAGGTGTTAAAGCGGGACGCGGCCTGCAACCCTTAATGTGCAGCACATGGGTGTAAAATAACGCACTTATAATTTGCCTTAGTCGGTGTTCTGAAGCCTGCGGCTGTGTGTTATAACCAATCCGATCACACGTGACCAGCGCGAATGTCCGTTTCTG]
consensusID : consensus_835#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence
[GTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTCCCCGCTGCATCCAGCTCCGGATTCCGACTGTCGAAAGGTACCGTGTGGCGGCTGTTGTCAGTCCGGCATTAAATGCGTGCGTTTGGCGGCGTGAAAGCGACACAAGCCGAGGCTACACAGGTGCGGGCGGGATGTGCAGCGACGCGGGATATTAACCGAACATCTTTAAAAACGCTTTAAAAACAAATTCTAAAAGTAGATATTTATTCACGGCAACGTCGGTAACCTGCCACCCAGCGGGACAGACGCTTATTTTCCCAAGGCCAGTCAGCTGCGCTAAATACTAAAGTGCGTCTGTTGTAACCTGAAGAGAAGGTTCCACTTTTGCGCGCCTGTCGTGGCCTCCTTCAACCCGATAGTTACAGAACCTTTAGTTCTGGAGCCGTGCTGGGGTCAAGTGTCCCCTCTCCCCCGTCAT]
[+] EMBL CA589986 [GTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTCCCCGCTGCATCCAGCTCCGGATTCCGACTGTCGAAAGGTACCGTGTGGCGGCTGTTGTCAGTCCGGCATTAAATGCGTGCGTTTGGCGGCGTGAAAGCGACACAAGCCGAGGCTACACAGGTGCGGGCGGGATGTGCAGCGACGCGGGATATTAACCGAACATCTTTAAAAACGCTTTAAAAACAAATTCTAAAAGTAGATATTTATTCACGGCAACGTCGGTAACCTGCCACCCAGCGGGACAGACGCTTATTTTCCCAAGGCCAGTCAGCTGCGCTAAATACTAAAGTGCGTCTGTTGTAACCTGAAGAGAAGGTTCCACTTTTGCGCGCCTGTCGTGGCCTCCTTCAACCCGATAGTTACAGAACCTTTAGTTCTGGAGCCGTGCTGGGGTCAAGTGTCCCCTCTCCCCCGTCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_835#0 ACTGACAGTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTC 60
consensus_835#1 -------GTAAACAAGACCGTGGAATCATGTCCGCCTCGGCGCTCTCCTCCACAGCCCTC 53
*****************************************************
consensus_835#0 CCCGCTGCATCCAGCTCCGGATTCCGACTGTCGAAAGAGCATCTGGTGGTGGCTGTGCCC 120
consensus_835#1 CCCGCTGCATCCAGCTCCGGATTCCGACTGTCGAAAG-GTACCGTGTGGCGGCTGTT--- 109
************************************* * * * **** ******
consensus_835#0 GTCGCAGTCATCTCGGCCATCGGAGGGTTCCTTGTCAGCCAGTACCTGAACAGGCGTTGC 180
consensus_835#1 ------GTCAGTCCGGCATTAAATGCGTGCGTT--TGGC-------------GGCGTGAA 148
**** **** * * ** * ** ** *****
consensus_835#0 TGTACGAAGGGCCTGGTGAACACGTCCATCAGTAAAGACAGCCCCAAAGTGGTCCACAGC 240
consensus_835#1 AGCGACACAAGCCGAGGCTACACAGGTGCGGGCGGGATGTGCAGCGACGCGGGATATTAA 208
* * *** * **** * ** * * * ** *
consensus_835#0 TTTGACATGGAGGACATTGGTTCTAAAGCTGTCTACTGCCGCTGCTGGAAGTCAAAGAAG 300
consensus_835#1 CCGAACATCTTTAAAAACGCTTTAAAAACAAATT----------CTAAAAGT---AGATA 255
**** * * * ** *** * * ** **** ***
consensus_835#0 TTCCCTTACTGTGACGGGTCCCACTCCAAACACAACGACGAGACCGGGGACAACGTCGGA 360
consensus_835#1 TTTATTCACGGCAACGTCGGTAACCTGCCACCCAGC----------GGGACAGA------ 299
** * ** * *** ** ** ** * ******
consensus_835#0 CCGCTCATCATCAAGAAGAAGGACACTTAAGCCAAGAGGCTGCGTAACAGCTTTGCACCT 420
consensus_835#1 -CGCTTATTTTCCCAAGGCCAGTCAGCTGCGCTAAA----TACTAAAG-----TGCGTCT 349
**** ** ** * * * ** * ** ** * * ** *** **
consensus_835#0 GCCTTCTCCCATCAGCTCCAGTTCATTGTGATGTTTGTCTAGAATAATTGATCCTTAACT 480
consensus_835#1 GTTGTAACCTGAAGAGAAGGTTCCACTTT--TGCGCGCCTGTCGTGGCCT-CCTTCAACC 406
* * ** * ** * * ** * ** * * * ***
consensus_835#0 TAATAGGGCAAAAACTCTAAAAATCCTAATCAAAAAAGGTTCCAAATGTCTGCGCTGCGC 540
consensus_835#1 CGATAGTTACAGAACCTTTAGT-TCTGGAGCCGTGCTGGGGTCAAGTGTCCCCTCTCCCC 465
**** * *** * * ** * * ** *** **** * ** * *
consensus_835#0 CATTGTTGACCGCCGTGGAATCAAAGGTCATTTCAGGACAGATAAGATGAGGGACTTTGA 600
consensus_835#1 CGTCAT------------------------------------------------------ 471
* * *
consensus_835#0 CTCCAGACGCAAAGGTATTCTGACTTTTGCTGCAGGAGGTGTTAAAGCGGGACGCGGCCT 660
consensus_835#1 ------------------------------------------------------------
consensus_835#0 GCAACCCTTAATGTGCAGCACATGGGTGTAAAATAACGCACTTATAATTTGCCTTAGTCG 720
consensus_835#1 ------------------------------------------------------------
consensus_835#0 GTGTTCTGAAGCCTGCGGCTGTGTGTTATAACCAATCCGATCACACGTGACCAGCGCGAA 780
consensus_835#1 ------------------------------------------------------------
consensus_835#0 TGTCCGTTTCTG 792
consensus_835#1 ------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |