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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence
[CTTCAATGGCCTCGGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGCCAGATCCACCAAGCGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCGCGTCGAGTCGCGGGACCTGTCCGAGCCCCGGCTGGCCGACCCCAGCTTGGCTCCAGAGCACTACCAGGCGGTCTGCAGGGCTCTTTTTGTAGAAACGCTGGAGCTGCAGACGTTCCTCATCAAAATCCGAGACGCTAAACAGATGCTGAAGAAGATCACCTCAGAGGAATCACCCGGAGACAATTCAACAGCCGAGCTGGATGCCCTGAAGCACAGAGACTGGGCACGTCTGTGGGTGCAGCTGATGAAGGAGCTCCGGCAGGGAGTGAAGCTGAAGAAGGTGCAGGAGCAGCCCTTCAACACTCTGCCCACGGAATTCAGCCTCACCCCCTTTGAGATGCTGATGCAGGACATACGAGCTCGCAAATTCCAGCTGCGCAAAGTCATGGTGGGCGGCGATATACCCACCAGAGTGAAGAGGAACGCCCATGAACTCATCTTGGACTTCATCAGATCCAGACCCCCCCTTAAACCAGTTTCCGAG]
[+] EMBL CA590800 [CTTCAATGGCCTCGGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGCCAGATCCACCAAGCGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCGCGTCGAGTCGCGGGACCTGTCCGAGCCCCGGCTGGCCGACCCCAGCTTGGCTCCAGAGCACTACCAGGCGGTCTGCAGGGCTCTTTTTGTAGAAACGCTGGAGCTGCAGACGTTCCTCATCAAAATCCGAGACGCTAAACAGATGCTGAAGAAGATCACCTCAGAGGAATCACCCGGAGACAATTCAACAGCCGAGCTGGATGCCCTGAAGCACAGAGACTGGGCACGTCTGTGGGTGCAGCTGATGAAGGAGCTCCGGCAGGGAGTGAAGCTGAAGAAGGTGCAGGAGCAGCCCTTCAACACTCTGCCCACGGAATTCAGCCTCACCCCCTTTGAGATGCTGATGCAGGACATACGAGCTCGCAAATTCCAGCTGCGCAAAGTCATGGTGGGCGGCGATATACCCACCAGAGTGAAGAGGAACGCCCATGAACTCATCTTGGACTTCATCAGATCCAGACCCCCCCTTAAACCAGTTTCCGAG]
consensusID : consensus_848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence
[GGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGCCAGATCCACCAAGCGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCGCGTCGAGTCGCGGGACCTGTCCGAGCCCCGGGAACTGTCTCTGGAGGAGGTGCTGGAGTCCTATGAGCAGCCCATCAACGAGGAGCAGGCATGGGCGGTGTGCTACCAGTGCTGCAGCGGGCTCCGGGTGCCCCGCCCGCCAACGGCAGGAGTCAGCCCGGTAAAGGGTCCATCTTCCATCCTCCTGCACCGGGACGGAACCGTGGCCCTGCGGACGCGCAACAGCGGTCCTGACCAGTTGAGCGACGCCGCCCTTGTCTCTTCGGACGATGACGCTCTTCTTCCTGCGGCTCTGGAGCGCCAGGTGGTCCAGTCGCTGGGAGTGGCCATCTACCGAGCTCTGGACTGGGGGCTGGACGACAGCGAGGAGCGGGAGCTCGGCCCGCAGCTGGAGCGCCTCATCGAACGCATGGCGGGAGGCGACCAGGGCGGAGAGG]
[+] EMBL CA590119 [GGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGCCAGATCCACCAAGCGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCGCGTCGAGTCGCGGGACCTGTCCGAGCCCCGGGAACTGTCTCTGGAGGAGGTGCTGGAGTCCTATGAGCAGCCCATCAACGAGGAGCAGGCATGGGCGGTGTGCTACCAGTGCTGCAGCGGGCTCCGGGTGCCCCGCCCGCCAACGGCAGGAGTCAGCCCGGTAAAGGGTCCATCTTCCATCCTCCTGCACCGGGACGGAACCGTGGCCCTGCGGACGCGCAACAGCGGTCCTGACCAGTTGAGCGACGCCGCCCTTGTCTCTTCGGACGATGACGCTCTTCTTCCTGCGGCTCTGGAGCGCCAGGTGGTCCAGTCGCTGGGAGTGGCCATCTACCGAGCTCTGGACTGGGGGCTGGACGACAGCGAGGAGCGGGAGCTCGGCCCGCAGCTGGAGCGCCTCATCGAACGCATGGCGGGAGGCGACCAGGGCGGAGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_848#0 CTTCAATGGCCTCGGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGC 60
consensus_848#1 -------------GGTGTTTCACAAGTGAAGGATGGGCTTCACGGTACCGCCGCCATGGC 47
***********************************************
consensus_848#0 CAGATCCACCAAGCGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCG 120
consensus_848#1 CAGATCCACCAAGCGAACCGCCGAGGATGGAGACCCACGGATAACCGTTCCCACGGACCG 107
************************************************************
consensus_848#0 CGTCGAGTCGCGGGACCTGTCCGAGCCCCGGCTGGCCGACCCCAGCTTGGCTCCAGAGCA 180
consensus_848#1 CGTCGAGTCGCGGGACCTGTCCGAGCCCCGG------------GAACTGTCTCTGGAGGA 155
******************************* ** *** *** *
consensus_848#0 CTACCAGGCGGTCTGCAGGGCTCTTTTTGTAGAAACGCTGGAGCTGCAGACGTTCCTCAT 240
consensus_848#1 GGTGCTGGAGTCCTATGAGCAGCCCATCAACGAGGAGCAGG---CATGGGCGGTGTGCTA 212
* ** * ** * * * ** ** ** * ** * *
consensus_848#0 CAAAATCCGAGACGCTAAACAGATGCTGAAGAAGATCACCTCAGAGGAATCA-CCCGGAG 299
consensus_848#1 CCAGTGCTGCAGCGGGCTCCGGGTGCCCCGCCCGCCAACGGCA--GGAGTCAGCCCGGTA 270
* * * * ** * * *** * ** ** *** *** *****
consensus_848#0 ACAATTCAACAGCCGAGCTGGATGCCCTGAAGCACAGAGACTGGGCACGTCTGTGGGTGC 359
consensus_848#1 AAGGGTCCATCTTCCATCCTCCTGCACCGGGAC---GGAACCGTGGCCCTGCGGACGCGC 327
* ** * * * * *** * * * * ** * * * * * * **
consensus_848#0 AGCTGATGAAGGAGCTCCGGCAGGGAGTGAAGCTGAAGAAGGTGCAGGAGCAGCCCTTCA 419
consensus_848#1 AAC------AGCGGTCCTGACC---AGTTGAGC-------------GACGCCGCCCTTGT 365
* * ** * * * * *** *** * ** ******
consensus_848#0 ACACTCTGCCCACGGAATTCAGCCTCACCCC-CTTTGAGATGCTGATGCAGGACATACGA 478
consensus_848#1 CTCTTCGGACGATGACGCTCTTCTTCCTGCGGCTCTGGAGCGCCAG-GTGGTCCAGTCG- 423
** * * * * ** * ** * ** ** ** * * ** **
consensus_848#0 GCTCGCAAATTCCAGCTGCGCAAAGTCATGGTGGGCGGCGATATACCCACCAGAGTGAAG 538
consensus_848#1 -CTGGGAGTGGCCATCTAC-CGAGCTCTGGACTGGGGGCTGGACGACAGCGAGGAGCGGG 481
** * * *** ** * * * ** * ** *** * * * ** *
consensus_848#0 AGGAACGCCCATGAACTCATCTTGGACTTCATCAGATCCAGACCCCCCCTTAAACCAGTT 598
consensus_848#1 AGCTCGGCCCGCAGCTGGA----GCGCCTCATCGAACGCATGGCGGGAGGCGACCAGGGC 537
** **** * * * ***** * ** * * * *
consensus_848#0 TCCGAG- 604
consensus_848#1 GGAGAGG 544
***
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |