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Takifugu rubripes
cluster # 849 cluster # 849       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_849#0 length = 626 sequences # 1  
consensus_849#1 length = 364 sequences # 1  

consensusID : consensus_849#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence
                              [TTACTATGGCTCCAGCGAAGGAAAATGGTGGACTTGACAATCTCGCTTTTGATATGGACGAAGACATAAAAGACGGGCTCAAAGAAATGAGGGAAAAGCCGTCAGCATTACCTGACATCGTTTGGGGCCATCTTCTCCATCCCCCTCATTCTCTCAGAGAGCCTGTGTCTCCAGCATGACAGCCTGAGCCAGAGTCGCCTCATCAACACTATTTTCTTTGTTTCTGGGATTTGCACCATGCTGCAGGTCACCTTTGGAGTCAGGCTTCCTATCCTACAGGGGGGTACATTTTCTTTGCTGACCCCCGCTATGGCAATGTTGTCCATGCCAGAGTGGGAGTGTCCTGCTTGGACTTACAATGCCAGTTTGGTTAACGTCTCATCACCAGTCTTTATAGAAGTGTGGCAGAGCCGGATGAGAACTCTGCAGGGCTCCATCATGGTGGCTTCGCTCCTCCAGATCGTGGCCGGCTTCTCGGGCATGATCGGCTTTCTCATGCGCTTCATAGGACCTTTGACCATTGCTCCCACAATCACCCTCATTGGTCTGTCGGTTTATCAAACAGCCGGAGCCAAAGCTGGGAGCCACTGGGGCATCTCTGCCATGACCACTGCGCTGATCATCCT]

[+] EMBL CA590160             [TTACTATGGCTCCAGCGAAGGAAAATGGTGGACTTGACAATCTCGCTTTTGATATGGACGAAGACATAAAAGACGGGCTCAAAGAAATGAGGGAAAAGCCGTCAGCATTACCTGACATCGTTTGGGGCCATCTTCTCCATCCCCCTCATTCTCTCAGAGAGCCTGTGTCTCCAGCATGACAGCCTGAGCCAGAGTCGCCTCATCAACACTATTTTCTTTGTTTCTGGGATTTGCACCATGCTGCAGGTCACCTTTGGAGTCAGGCTTCCTATCCTACAGGGGGGTACATTTTCTTTGCTGACCCCCGCTATGGCAATGTTGTCCATGCCAGAGTGGGAGTGTCCTGCTTGGACTTACAATGCCAGTTTGGTTAACGTCTCATCACCAGTCTTTATAGAAGTGTGGCAGAGCCGGATGAGAACTCTGCAGGGCTCCATCATGGTGGCTTCGCTCCTCCAGATCGTGGCCGGCTTCTCGGGCATGATCGGCTTTCTCATGCGCTTCATAGGACCTTTGACCATTGCTCCCACAATCACCCTCATTGGTCTGTCGGTTTATCAAACAGCCGGAGCCAAAGCTGGGAGCCACTGGGGCATCTCTGCCATGACCACTGCGCTGATCATCCT]


>consensus_849#0 TTACTATGGCTCCAGCGAAGGAAAATGGTGGACTTGACAATCTCGCTTTTGATATGGACG AAGACATAAAAGACGGGCTCAAAGAAATGAGGGAAAAGCCGTCAGCATTACCTGACATCG TTTGGGGCCATCTTCTCCATCCCCCTCATTCTCTCAGAGAGCCTGTGTCTCCAGCATGAC AGCCTGAGCCAGAGTCGCCTCATCAACACTATTTTCTTTGTTTCTGGGATTTGCACCATG CTGCAGGTCACCTTTGGAGTCAGGCTTCCTATCCTACAGGGGGGTACATTTTCTTTGCTG ACCCCCGCTATGGCAATGTTGTCCATGCCAGAGTGGGAGTGTCCTGCTTGGACTTACAAT GCCAGTTTGGTTAACGTCTCATCACCAGTCTTTATAGAAGTGTGGCAGAGCCGGATGAGA ACTCTGCAGGGCTCCATCATGGTGGCTTCGCTCCTCCAGATCGTGGCCGGCTTCTCGGGC ATGATCGGCTTTCTCATGCGCTTCATAGGACCTTTGACCATTGCTCCCACAATCACCCTC ATTGGTCTGTCGGTTTATCAAACAGCCGGAGCCAAAGCTGGGAGCCACTGGGGCATCTCT GCCATGACCACTGCGCTGATCATCCT



consensusID : consensus_849#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 364
fasta sequence
                              [CGTTCTCAAAGAAATGAGGGAAAAGCCGTCAGGTGAGGACAAAAGCAAACTGGCCTACTGTGTGACAGACACCCCTCCGTGGTACCTTTGCATTGCTTTGTCCATTCAGCATTACCTGACATCGTTTGGGGCCATCTTCTCCATCCCCCTCATTCTCTCAGAGAGCCTGTGTCTCCAGCATGACAGCCTGAGCCAGAGTCGCCTCATCAACACTATTTTCTTTGTTTCTGGGATTTGCACCATGCTGCAGGTCACCTTTNGAGNCAGGCTTTCTATCCTACANNNNNNNACATTTTCTTTGCTNACCCCCGCTATGGCAATGTTGTCCATGCCAGAGGGACAATTTCCTGCTTGGCTTTACAAT]

[+] EMBL FR0059624            [CGTTCTCAAAGAAATGAGGGAAAAGCCGTCAGGTGAGGACAAAAGCAAACTGGCCTACTGTGTGACAGACACCCCTCCGTGGTACCTTTGCATTGCTTTGTCCATTCAGCATTACCTGACATCGTTTGGGGCCATCTTCTCCATCCCCCTCATTCTCTCAGAGAGCCTGTGTCTCCAGCATGACAGCCTGAGCCAGAGTCGCCTCATCAACACTATTTTCTTTGTTTCTGGGATTTGCACCATGCTGCAGGTCACCTTTNGAGNCAGGCTTTCTATCCTACANNNNNNNACATTTTCTTTGCTNACCCCCGCTATGGCAATGTTGTCCATGCCAGAGGGACAATTTCCTGCTTGGCTTTACAAT]


>consensus_849#1 CGTTCTCAAAGAAATGAGGGAAAAGCCGTCAGGTGAGGACAAAAGCAAACTGGCCTACTG TGTGACAGACACCCCTCCGTGGTACCTTTGCATTGCTTTGTCCATTCAGCATTACCTGAC ATCGTTTGGGGCCATCTTCTCCATCCCCCTCATTCTCTCAGAGAGCCTGTGTCTCCAGCA TGACAGCCTGAGCCAGAGTCGCCTCATCAACACTATTTTCTTTGTTTCTGGGATTTGCAC CATGCTGCAGGTCACCTTTNGAGNCAGGCTTTCTATCCTACANNNNNNNACATTTTCTTT GCTNACCCCCGCTATGGCAATGTTGTCCATGCCAGAGGGACAATTTCCTGCTTGGCTTTA CAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_849#0      ---TTACTATGGCTCCAGCGAAGGA-----AAATGGTGGACTTGACAATCTCGCTTTTGA 52
consensus_849#1      CGTTCTCAAAGAAATGAGGGAAAAGCCGTCAGGTGAGGACAAAAGCAAACTGGCCTACTG 60
                        *  * * *     ** ***        *  **  *       *** ** ** *    

consensus_849#0      TATGGACGAAGACATAAAAGACGGGCTCAAAGAAATGAGGGAAAAGCCGTCAGCATTACC 112
consensus_849#1      TGTG-ACAGACACCCCTCCG-TGGTACCTTTGCATTGCTTTGT--CCATTCAGCATTACC 116
                     * ** **  * **      *  **   *   * * **         *  ***********

consensus_849#0      TGACATCGTTTGGGGCCATCTTCTCCATCCCCCTCATTCTCTCAGAGAGCCTGTGTCTCC 172
consensus_849#1      TGACATCGTTTGGGGCCATCTTCTCCATCCCCCTCATTCTCTCAGAGAGCCTGTGTCTCC 176
                     ************************************************************

consensus_849#0      AGCATGACAGCCTGAGCCAGAGTCGCCTCATCAACACTATTTTCTTTGTTTCTGGGATTT 232
consensus_849#1      AGCATGACAGCCTGAGCCAGAGTCGCCTCATCAACACTATTTTCTTTGTTTCTGGGATTT 236
                     ************************************************************

consensus_849#0      GCACCATGCTGCAGGTCACCTTTGGAGTCAGGCTTCCTATCCTACAGGGGGGTACATTTT 292
consensus_849#1      GCACCATGCTGCAGGTCACCTTTNGAGNCAGGCTTTCTATCCTACANNNNNNNACATTTT 296
                     *********************** *** ******* **********       *******

consensus_849#0      CTTTGCTGACCCCCGCTATGGCAATGTTGTCCATGCCAGAGTGGGAGTGTCCTGCTTGGA 352
consensus_849#1      CTTTGCTNACCCCCGCTATGGCAATGTTGTCCATGCCAGAGGGACAATTTCCTGCTTGGC 356
                     ******* ********************************* *  * * ********** 

consensus_849#0      CTTACAATGCCAGTTTGGTTAACGTCTCATCACCAGTCTTTATAGAAGTGTGGCAGAGCC 412
consensus_849#1      TTTACAAT---------------------------------------------------- 364
                      *******                                                    

consensus_849#0      GGATGAGAACTCTGCAGGGCTCCATCATGGTGGCTTCGCTCCTCCAGATCGTGGCCGGCT 472
consensus_849#1      ------------------------------------------------------------
                                                                                 

consensus_849#0      TCTCGGGCATGATCGGCTTTCTCATGCGCTTCATAGGACCTTTGACCATTGCTCCCACAA 532
consensus_849#1      ------------------------------------------------------------
                                                                                 

consensus_849#0      TCACCCTCATTGGTCTGTCGGTTTATCAAACAGCCGGAGCCAAAGCTGGGAGCCACTGGG 592
consensus_849#1      ------------------------------------------------------------
                                                                                 

consensus_849#0      GCATCTCTGCCATGACCACTGCGCTGATCATCCT 626
consensus_849#1      ----------------------------------
                                                       




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)