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Takifugu rubripes
cluster # 855 cluster # 855       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_855#0 length = 457 sequences # 1  
 consensus_855#1 length = 355 sequences # 1  
consensusID : consensus_855#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence 
                              [GTTTTTTGAACCTGCGCAAGAGGAGTGGCGCCGGCTTTTACTCGCTACAATTCTTTTGCCTGTTTTTTTTTAATGTGCTCCGAGCAGACGGGCTAGAAGTGGATGCCACTTGCTCGGTCAGCCAGTAGGACACAGGTTTACGACAAGACCTTCTGAAATGGGCCTGGTTTTCAGCTGGCTCTGGGGTCGCAGGGCGCTTCCTGGAGTCGCCGCGGAGACGCAGGTGAGTTCTCCAGCTGAGGCTCCAGCAGAAGCTCCAGAGGAGACCGAGATCTTAACAGAAGAAACAGCAAATGTGACAACAGAGCCTGAACTGAGGCATGAAACCCTTGAAGCAAAAACTGAAGAGGAGCCCGAGGCCCCCGCAGAGGGGGAGGCCCCCGTGGAGACTGAGATGGAAGTGGCCATCACGGAAGCCCCCGAGGAGCCCGAGGTCACAGCACAGGCTGGAGGCCGA]

[+] EMBL CA590212             [GTTTTTTGAACCTGCGCAAGAGGAGTGGCGCCGGCTTTTACTCGCTACAATTCTTTTGCCTGTTTTTTTTTAATGTGCTCCGAGCAGACGGGCTAGAAGTGGATGCCACTTGCTCGGTCAGCCAGTAGGACACAGGTTTACGACAAGACCTTCTGAAATGGGCCTGGTTTTCAGCTGGCTCTGGGGTCGCAGGGCGCTTCCTGGAGTCGCCGCGGAGACGCAGGTGAGTTCTCCAGCTGAGGCTCCAGCAGAAGCTCCAGAGGAGACCGAGATCTTAACAGAAGAAACAGCAAATGTGACAACAGAGCCTGAACTGAGGCATGAAACCCTTGAAGCAAAAACTGAAGAGGAGCCCGAGGCCCCCGCAGAGGGGGAGGCCCCCGTGGAGACTGAGATGGAAGTGGCCATCACGGAAGCCCCCGAGGAGCCCGAGGTCACAGCACAGGCTGGAGGCCGA]




>consensus_855#0
GTTTTTTGAACCTGCGCAAGAGGAGTGGCGCCGGCTTTTACTCGCTACAATTCTTTTGCC
TGTTTTTTTTTAATGTGCTCCGAGCAGACGGGCTAGAAGTGGATGCCACTTGCTCGGTCA
GCCAGTAGGACACAGGTTTACGACAAGACCTTCTGAAATGGGCCTGGTTTTCAGCTGGCT
CTGGGGTCGCAGGGCGCTTCCTGGAGTCGCCGCGGAGACGCAGGTGAGTTCTCCAGCTGA
GGCTCCAGCAGAAGCTCCAGAGGAGACCGAGATCTTAACAGAAGAAACAGCAAATGTGAC
AACAGAGCCTGAACTGAGGCATGAAACCCTTGAAGCAAAAACTGAAGAGGAGCCCGAGGC
CCCCGCAGAGGGGGAGGCCCCCGTGGAGACTGAGATGGAAGTGGCCATCACGGAAGCCCC
CGAGGAGCCCGAGGTCACAGCACAGGCTGGAGGCCGA

consensusID : consensus_855#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 355
fasta sequence 
                              [TCTGCTCCGCTCCGCTCCTCCATCAACGTGCAGCCGAAATGCCCAGCGAGAGGAAGAAGAACAAGCGCCGCATGACCAGGGTGGTGAGTTCTCCAGCTGAGGCTCCAGCAGAAGCTCCAGAGGAGACCGAGATCTTAACAGAAGAAACAGCAAATGTGACAACAGAGCCTGAACTGAGGCATGAAACCCTTGAAGCAAAAACTGAAGAGGAGCCCGAGGCCCCCGCAGAGGGGGAGGCCCCCGTGGAGACTGAGATGGAAGTGGCCATCACGGAAGCCCCCGAGGAGCCCGAGGTCACAGCACAGGCTGGAGGCCGAGTATCCCCGGGGGAGGAACCGGCTGCGGACGCAGAGGC]

[+] EMBL FR0060346            [TCTGCTCCGCTCCGCTCCTCCATCAACGTGCAGCCGAAATGCCCAGCGAGAGGAAGAAGAACAAGCGCCGCATGACCAGGGTGGTGAGTTCTCCAGCTGAGGCTCCAGCAGAAGCTCCAGAGGAGACCGAGATCTTAACAGAAGAAACAGCAAATGTGACAACAGAGCCTGAACTGAGGCATGAAACCCTTGAAGCAAAAACTGAAGAGGAGCCCGAGGCCCCCGCAGAGGGGGAGGCCCCCGTGGAGACTGAGATGGAAGTGGCCATCACGGAAGCCCCCGAGGAGCCCGAGGTCACAGCACAGGCTGGAGGCCGAGTATCCCCGGGGGAGGAACCGGCTGCGGACGCAGAGGC]




>consensus_855#1
TCTGCTCCGCTCCGCTCCTCCATCAACGTGCAGCCGAAATGCCCAGCGAGAGGAAGAAGA
ACAAGCGCCGCATGACCAGGGTGGTGAGTTCTCCAGCTGAGGCTCCAGCAGAAGCTCCAG
AGGAGACCGAGATCTTAACAGAAGAAACAGCAAATGTGACAACAGAGCCTGAACTGAGGC
ATGAAACCCTTGAAGCAAAAACTGAAGAGGAGCCCGAGGCCCCCGCAGAGGGGGAGGCCC
CCGTGGAGACTGAGATGGAAGTGGCCATCACGGAAGCCCCCGAGGAGCCCGAGGTCACAG
CACAGGCTGGAGGCCGAGTATCCCCGGGGGAGGAACCGGCTGCGGACGCAGAGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_855#0      GTTTTTTGAACCTGCGCAAGAGGAGTGGCGCCGGCTTTTACTCGCTACAATTCTTTTGCC 60
consensus_855#1      ------------------------------------------------------------
                                                                                 

consensus_855#0      TGTTTTTTTTTAATGTGCTCCGAGCAGACGGGCTAGAAGTGGATGCCACTTGCTCGGTCA 120
consensus_855#1      ------------------------------------------------------------
                                                                                 

consensus_855#0      GCCAGTAGGACACAGGTTTACGACAAGACCTTCTGAAATGGGCCTGGTTTTCAGCTGGCT 180
consensus_855#1      ----------------TCTGCTCCGCTCCGCTCCTCCATCAACGTGCAGCCGAAATGCCC 44
                                     * * *  *    *  **    **   * **      *  ** * 

consensus_855#0      CTGGGGTCGCAGGGCGCTTCCTGGAGTCGCCGCGGAGACGCAGGTGAGTTCTCCAGCTGA 240
consensus_855#1      AGCGAGAGGAAGAAGA---ACAAGCGCCGC-ATGACCAGGGTGGTGAGTTCTCCAGCTGA 100
                        * *  * **        *  * * ***   *   * *  ******************

consensus_855#0      GGCTCCAGCAGAAGCTCCAGAGGAGACCGAGATCTTAACAGAAGAAACAGCAAATGTGAC 300
consensus_855#1      GGCTCCAGCAGAAGCTCCAGAGGAGACCGAGATCTTAACAGAAGAAACAGCAAATGTGAC 160
                     ************************************************************

consensus_855#0      AACAGAGCCTGAACTGAGGCATGAAACCCTTGAAGCAAAAACTGAAGAGGAGCCCGAGGC 360
consensus_855#1      AACAGAGCCTGAACTGAGGCATGAAACCCTTGAAGCAAAAACTGAAGAGGAGCCCGAGGC 220
                     ************************************************************

consensus_855#0      CCCCGCAGAGGGGGAGGCCCCCGTGGAGACTGAGATGGAAGTGGCCATCACGGAAGCCCC 420
consensus_855#1      CCCCGCAGAGGGGGAGGCCCCCGTGGAGACTGAGATGGAAGTGGCCATCACGGAAGCCCC 280
                     ************************************************************

consensus_855#0      CGAGGAGCCCGAGGTCACAGCACAGGCTGGAGGCCGA----------------------- 457
consensus_855#1      CGAGGAGCCCGAGGTCACAGCACAGGCTGGAGGCCGAGTATCCCCGGGGGAGGAACCGGC 340
                     *************************************                       

consensus_855#0      ---------------
consensus_855#1      TGCGGACGCAGAGGC 355


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)