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Takifugu rubripes
cluster # 861 cluster # 861       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_861#0 length = 611 sequences # 1  
consensus_861#1 length = 434 sequences # 1  

consensusID : consensus_861#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence
                              [GGCATGGCGTCCTTCAAGTAGAGACAGAACGCCGCTGTGCCTCAGCTGCTGCAGCCGTGCGTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGGGAGCAGGCCAGACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCATGGCCCAGGGCTGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGTTGTGCCAGACACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGGGAATTGTGGCCCCTGCACCGGCCCCTCACTCACTCCTGCTCACTCTCTCTGCTCACATTTAAAGACAATGACCCTACAGTAGTCAATGAGGCTTACTGGCGTTCCTGCGCTGCTTTATTGGGCCAGGTCCTGGAGACGGCGTTCAAGGACAAGTTTAATGTCGATCTGCTCAGCACAGTGGAGGTGCCAGTCACATCAGGGGCGTTCTGCTGTGACGTGGTCCTTGACCCTCAGCTGGACTCTTGGACTCCATCTGAGGAGTCTTTGCGCTCTTTGACCAAAGGAGCCCAGCAGCTGATCCTGAAAGACCTGGCCTGGGAG]

[+] EMBL CA590236             [GGCATGGCGTCCTTCAAGTAGAGACAGAACGCCGCTGTGCCTCAGCTGCTGCAGCCGTGCGTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGGGAGCAGGCCAGACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCATGGCCCAGGGCTGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGTTGTGCCAGACACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGGGAATTGTGGCCCCTGCACCGGCCCCTCACTCACTCCTGCTCACTCTCTCTGCTCACATTTAAAGACAATGACCCTACAGTAGTCAATGAGGCTTACTGGCGTTCCTGCGCTGCTTTATTGGGCCAGGTCCTGGAGACGGCGTTCAAGGACAAGTTTAATGTCGATCTGCTCAGCACAGTGGAGGTGCCAGTCACATCAGGGGCGTTCTGCTGTGACGTGGTCCTTGACCCTCAGCTGGACTCTTGGACTCCATCTGAGGAGTCTTTGCGCTCTTTGACCAAAGGAGCCCAGCAGCTGATCCTGAAAGACCTGGCCTGGGAG]


>consensus_861#0 GGCATGGCGTCCTTCAAGTAGAGACAGAACGCCGCTGTGCCTCAGCTGCTGCAGCCGTGC GTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGGGAGCAGGCCA GACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCATGGCCCAGGGC TGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGTTGTGCCAGAC ACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGGGAATTGTGGC CCCTGCACCGGCCCCTCACTCACTCCTGCTCACTCTCTCTGCTCACATTTAAAGACAATG ACCCTACAGTAGTCAATGAGGCTTACTGGCGTTCCTGCGCTGCTTTATTGGGCCAGGTCC TGGAGACGGCGTTCAAGGACAAGTTTAATGTCGATCTGCTCAGCACAGTGGAGGTGCCAG TCACATCAGGGGCGTTCTGCTGTGACGTGGTCCTTGACCCTCAGCTGGACTCTTGGACTC CATCTGAGGAGTCTTTGCGCTCTTTGACCAAAGGAGCCCAGCAGCTGATCCTGAAAGACC TGGCCTGGGAG



consensusID : consensus_861#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence
                              [ACTATCCGTTCATGTATATTTACGTTTCTTTCTTAGCTTGTTAATATTATAAAAGCATCCTTTGAAATGGTAACCAGGAAGGTGTGTCAATTCCTCCAGCGCCGCTGTGCCTCAGCTGCTGCAGCCGTGCGTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGGGAGCAGGCCAGACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCATGGCCCAGGGCTGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGTTGTGCCAGACACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGGGAATTGTGGCCCCTGCACCNGGCCCTCACTCACTCCTGCTCACTTTCTCTGCTCACATTTANNGACAATGACCC]

[+] EMBL FR0057492            [ACTATCCGTTCATGTATATTTACGTTTCTTTCTTAGCTTGTTAATATTATAAAAGCATCCTTTGAAATGGTAACCAGGAAGGTGTGTCAATTCCTCCAGCGCCGCTGTGCCTCAGCTGCTGCAGCCGTGCGTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGGGAGCAGGCCAGACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCATGGCCCAGGGCTGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGTTGTGCCAGACACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGGGAATTGTGGCCCCTGCACCNGGCCCTCACTCACTCCTGCTCACTTTCTCTGCTCACATTTANNGACAATGACCC]


>consensus_861#1 ACTATCCGTTCATGTATATTTACGTTTCTTTCTTAGCTTGTTAATATTATAAAAGCATCC TTTGAAATGGTAACCAGGAAGGTGTGTCAATTCCTCCAGCGCCGCTGTGCCTCAGCTGCT GCAGCCGTGCGTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGG GAGCAGGCCAGACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCAT GGCCCAGGGCTGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGT TGTGCCAGACACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGG GAATTGTGGCCCCTGCACCNGGCCCTCACTCACTCCTGCTCACTTTCTCTGCTCACATTT ANNGACAATGACCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_861#0      ------------------------------------------------------------
consensus_861#1      ACTATCCGTTCATGTATATTTACGTTTCTTTCTTAGCTTGTTAATATTATAAAAGCATCC 60
                                                                                 

consensus_861#0      ---GGCATGGCGTCCTTCAAGTAGAGACAG-------AACGCCGCTGTGCCTCAGCTGCT 50
consensus_861#1      TTTGAAATGGTAACCAGGAAGGTGTGTCAATTCCTCCAGCGCCGCTGTGCCTCAGCTGCT 120
                        *  ****   **   ***  * * **        * *********************

consensus_861#0      GCAGCCGTGCGTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGG 110
consensus_861#1      GCAGCCGTGCGTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGG 180
                     ************************************************************

consensus_861#0      GAGCAGGCCAGACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCAT 170
consensus_861#1      GAGCAGGCCAGACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCAT 240
                     ************************************************************

consensus_861#0      GGCCCAGGGCTGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGT 230
consensus_861#1      GGCCCAGGGCTGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGT 300
                     ************************************************************

consensus_861#0      TGTGCCAGACACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGG 290
consensus_861#1      TGTGCCAGACACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGG 360
                     ************************************************************

consensus_861#0      GAATTGTGGCCCCTGCACCGGCCCCTCACTCACTCCTGCTCACTCTCTCTGCTCACATTT 350
consensus_861#1      GAATTGTGGCCCCTGCACCNGGCCCTCACTCACTCCTGCTCACTTTCTCTGCTCACATTT 420
                     ******************* * ********************** ***************

consensus_861#0      AAAGACAATGACCCTACAGTAGTCAATGAGGCTTACTGGCGTTCCTGCGCTGCTTTATTG 410
consensus_861#1      ANNGACAATGACCC---------------------------------------------- 434
                     *  ***********                                              

consensus_861#0      GGCCAGGTCCTGGAGACGGCGTTCAAGGACAAGTTTAATGTCGATCTGCTCAGCACAGTG 470
consensus_861#1      ------------------------------------------------------------
                                                                                 

consensus_861#0      GAGGTGCCAGTCACATCAGGGGCGTTCTGCTGTGACGTGGTCCTTGACCCTCAGCTGGAC 530
consensus_861#1      ------------------------------------------------------------
                                                                                 

consensus_861#0      TCTTGGACTCCATCTGAGGAGTCTTTGCGCTCTTTGACCAAAGGAGCCCAGCAGCTGATC 590
consensus_861#1      ------------------------------------------------------------
                                                                                 

consensus_861#0      CTGAAAGACCTGGCCTGGGAG 611
consensus_861#1      ---------------------
                                          




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)