These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [GGCATGGCGTCCTTCAAGTAGAGACAGAACGCCGCTGTGCCTCAGCTGCTGCAGCCGTGCGTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGGGAGCAGGCCAGACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCATGGCCCAGGGCTGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGTTGTGCCAGACACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGGGAATTGTGGCCCCTGCACCGGCCCCTCACTCACTCCTGCTCACTCTCTCTGCTCACATTTAAAGACAATGACCCTACAGTAGTCAATGAGGCTTACTGGCGTTCCTGCGCTGCTTTATTGGGCCAGGTCCTGGAGACGGCGTTCAAGGACAAGTTTAATGTCGATCTGCTCAGCACAGTGGAGGTGCCAGTCACATCAGGGGCGTTCTGCTGTGACGTGGTCCTTGACCCTCAGCTGGACTCTTGGACTCCATCTGAGGAGTCTTTGCGCTCTTTGACCAAAGGAGCCCAGCAGCTGATCCTGAAAGACCTGGCCTGGGAG] [+] EMBL CA590236 [GGCATGGCGTCCTTCAAGTAGAGACAGAACGCCGCTGTGCCTCAGCTGCTGCAGCCGTGCGTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGGGAGCAGGCCAGACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCATGGCCCAGGGCTGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGTTGTGCCAGACACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGGGAATTGTGGCCCCTGCACCGGCCCCTCACTCACTCCTGCTCACTCTCTCTGCTCACATTTAAAGACAATGACCCTACAGTAGTCAATGAGGCTTACTGGCGTTCCTGCGCTGCTTTATTGGGCCAGGTCCTGGAGACGGCGTTCAAGGACAAGTTTAATGTCGATCTGCTCAGCACAGTGGAGGTGCCAGTCACATCAGGGGCGTTCTGCTGTGACGTGGTCCTTGACCCTCAGCTGGACTCTTGGACTCCATCTGAGGAGTCTTTGCGCTCTTTGACCAAAGGAGCCCAGCAGCTGATCCTGAAAGACCTGGCCTGGGAG] consensusID : consensus_861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence [ACTATCCGTTCATGTATATTTACGTTTCTTTCTTAGCTTGTTAATATTATAAAAGCATCCTTTGAAATGGTAACCAGGAAGGTGTGTCAATTCCTCCAGCGCCGCTGTGCCTCAGCTGCTGCAGCCGTGCGTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGGGAGCAGGCCAGACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCATGGCCCAGGGCTGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGTTGTGCCAGACACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGGGAATTGTGGCCCCTGCACCNGGCCCTCACTCACTCCTGCTCACTTTCTCTGCTCACATTTANNGACAATGACCC] [+] EMBL FR0057492 [ACTATCCGTTCATGTATATTTACGTTTCTTTCTTAGCTTGTTAATATTATAAAAGCATCCTTTGAAATGGTAACCAGGAAGGTGTGTCAATTCCTCCAGCGCCGCTGTGCCTCAGCTGCTGCAGCCGTGCGTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGGGAGCAGGCCAGACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCATGGCCCAGGGCTGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGTTGTGCCAGACACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGGGAATTGTGGCCCCTGCACCNGGCCCTCACTCACTCCTGCTCACTTTCTCTGCTCACATTTANNGACAATGACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_861#0 ------------------------------------------------------------ consensus_861#1 ACTATCCGTTCATGTATATTTACGTTTCTTTCTTAGCTTGTTAATATTATAAAAGCATCC 60 consensus_861#0 ---GGCATGGCGTCCTTCAAGTAGAGACAG-------AACGCCGCTGTGCCTCAGCTGCT 50 consensus_861#1 TTTGAAATGGTAACCAGGAAGGTGTGTCAATTCCTCCAGCGCCGCTGTGCCTCAGCTGCT 120 * **** ** *** * * ** * ********************* consensus_861#0 GCAGCCGTGCGTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGG 110 consensus_861#1 GCAGCCGTGCGTCCCCCTCCAGCTGAGATGCTGAGCCAGCGAAACGCTGTGTTCTCCCGG 180 ************************************************************ consensus_861#0 GAGCAGGCCAGACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCAT 170 consensus_861#1 GAGCAGGCCAGACAGAGAGCCCTGTATCCTCGCATAGAAAAGATAGAGGTATCGATGCAT 240 ************************************************************ consensus_861#0 GGCCCAGGGCTGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGT 230 consensus_861#1 GGCCCAGGGCTGGATGGGACGCTGCTGATCATGAACAAAGGAATGTCCACTCCTCTAAGT 300 ************************************************************ consensus_861#0 TGTGCCAGACACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGG 290 consensus_861#1 TGTGCCAGACACCTGACGGAGTATCACGTGAATAACTCGGTCCTGGCTCTGGTGGATGGG 360 ************************************************************ consensus_861#0 GAATTGTGGCCCCTGCACCGGCCCCTCACTCACTCCTGCTCACTCTCTCTGCTCACATTT 350 consensus_861#1 GAATTGTGGCCCCTGCACCNGGCCCTCACTCACTCCTGCTCACTTTCTCTGCTCACATTT 420 ******************* * ********************** *************** consensus_861#0 AAAGACAATGACCCTACAGTAGTCAATGAGGCTTACTGGCGTTCCTGCGCTGCTTTATTG 410 consensus_861#1 ANNGACAATGACCC---------------------------------------------- 434 * *********** consensus_861#0 GGCCAGGTCCTGGAGACGGCGTTCAAGGACAAGTTTAATGTCGATCTGCTCAGCACAGTG 470 consensus_861#1 ------------------------------------------------------------ consensus_861#0 GAGGTGCCAGTCACATCAGGGGCGTTCTGCTGTGACGTGGTCCTTGACCCTCAGCTGGAC 530 consensus_861#1 ------------------------------------------------------------ consensus_861#0 TCTTGGACTCCATCTGAGGAGTCTTTGCGCTCTTTGACCAAAGGAGCCCAGCAGCTGATC 590 consensus_861#1 ------------------------------------------------------------ consensus_861#0 CTGAAAGACCTGGCCTGGGAG 611 consensus_861#1 --------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |