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Takifugu rubripes
cluster # 863 cluster # 863       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_863#0 length = 600 sequences # 1  
consensus_863#1 length = 600 sequences # 1  

consensusID : consensus_863#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence
                              [GCAGGTGAATTGTTATACCCCTAAACTGGGCAGTTCAGGTTTCAACTCCCTTGAAAGCTGCCAGAAATTACTTGGAGTGATGCTGCCGAGGACTGAGCTGCTGTAGAGAACACATCAGTGGGTAAGGAACATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATGTCTGGTATCATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGTTTCTGGGAGATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTCTGCAATGACCTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAGCAGCTATCTGAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGTACTGTCGAGCGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCACCAGGATGTAAAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAAGAGACATATCACAAACAAATGATGGGAGGATTCAAAGAAACCAGAGAGGCAGACGAGGGC]

[+] EMBL CA591054             [GCAGGTGAATTGTTATACCCCTAAACTGGGCAGTTCAGGTTTCAACTCCCTTGAAAGCTGCCAGAAATTACTTGGAGTGATGCTGCCGAGGACTGAGCTGCTGTAGAGAACACATCAGTGGGTAAGGAACATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATGTCTGGTATCATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGTTTCTGGGAGATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTCTGCAATGACCTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAGCAGCTATCTGAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGTACTGTCGAGCGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCACCAGGATGTAAAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAAGAGACATATCACAAACAAATGATGGGAGGATTCAAAGAAACCAGAGAGGCAGACGAGGGC]


>consensus_863#0 GCAGGTGAATTGTTATACCCCTAAACTGGGCAGTTCAGGTTTCAACTCCCTTGAAAGCTG CCAGAAATTACTTGGAGTGATGCTGCCGAGGACTGAGCTGCTGTAGAGAACACATCAGTG GGTAAGGAACATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATG TCTGGTATCATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGT TTCTGGGAGATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTC TGCAATGACCTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAG CAGCTATCTGAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGT ACTGTCGAGCGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCAC CAGGATGTAAAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAA GAGACATATCACAAACAAATGATGGGAGGATTCAAAGAAACCAGAGAGGCAGACGAGGGC



consensusID : consensus_863#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence
                              [CAGACTTTTATTCAAGAGCTGAGAGGCGTGAGTAGATACCTCTGTCACATTTGCCAGCTTAAAAATAACTGAAGTCTTATTACTGAAGGGTCCATCCGAATTAATCCCCCATCCTGAATCCTGCAAATCTGAGTGCATTCCAGTCCCTACTCAAAAAGGATTTTATATCTGGGTAAGGAACATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATGTCTGGTATCATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGTTTCTGGGAGATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTCTGCAATGACCTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAGCAGCTATCTGAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGTACTGTCGAGCGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCACCAGGATGTAAAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAAGAGACATAT]

[+] EMBL CA590253             [CAGACTTTTATTCAAGAGCTGAGAGGCGTGAGTAGATACCTCTGTCACATTTGCCAGCTTAAAAATAACTGAAGTCTTATTACTGAAGGGTCCATCCGAATTAATCCCCCATCCTGAATCCTGCAAATCTGAGTGCATTCCAGTCCCTACTCAAAAAGGATTTTATATCTGGGTAAGGAACATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATGTCTGGTATCATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGTTTCTGGGAGATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTCTGCAATGACCTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAGCAGCTATCTGAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGTACTGTCGAGCGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCACCAGGATGTAAAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAAGAGACATAT]


>consensus_863#1 CAGACTTTTATTCAAGAGCTGAGAGGCGTGAGTAGATACCTCTGTCACATTTGCCAGCTT AAAAATAACTGAAGTCTTATTACTGAAGGGTCCATCCGAATTAATCCCCCATCCTGAATC CTGCAAATCTGAGTGCATTCCAGTCCCTACTCAAAAAGGATTTTATATCTGGGTAAGGAA CATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATGTCTGGTATC ATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGTTTCTGGGAG ATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTCTGCAATGAC CTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAGCAGCTATCT GAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGTACTGTCGAG CGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCACCAGGATGTA AAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAAGAGACATAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_863#0      -------------------------------GCAGGTGAAT-TGTTATACCCCTAAACT- 27
consensus_863#1      CAGACTTTTATTCAAGAGCTGAGAGGCGTGAGTAGATACCTCTGTCACATTTGCCAGCTT 60
                                                    * ** *   * *** * *      * ** 

consensus_863#0      --GGGCAGTTCAGGTTTCAACTCCCTTGAAAGCTGCCAGA--AATTACTTGGAGTGA-TG 82
consensus_863#1      AAAAATAACTGAAGTCTTATTACTGAAGGGTCCATCCGAATTAATCCCCCATCCTGAATC 120
                           *  * * ** * *   *    *    *  **  *  ***  *      *** * 

consensus_863#0      CTGCCGAG--GACTGAGCTGCTGT-----------AGAGAACACATCAGTGGGTAAGGAA 129
consensus_863#1      CTGCAAATCTGAGTGCATTCCAGTCCCTACTCAAAAAGGATTTTATATCTGGGTAAGGAA 180
                     ****  *   ** **   * * **           *  **    **   ***********

consensus_863#0      CATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATGTCTGGTATC 189
consensus_863#1      CATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATGTCTGGTATC 240
                     ************************************************************

consensus_863#0      ATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGTTTCTGGGAG 249
consensus_863#1      ATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGTTTCTGGGAG 300
                     ************************************************************

consensus_863#0      ATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTCTGCAATGAC 309
consensus_863#1      ATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTCTGCAATGAC 360
                     ************************************************************

consensus_863#0      CTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAGCAGCTATCT 369
consensus_863#1      CTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAGCAGCTATCT 420
                     ************************************************************

consensus_863#0      GAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGTACTGTCGAG 429
consensus_863#1      GAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGTACTGTCGAG 480
                     ************************************************************

consensus_863#0      CGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCACCAGGATGTA 489
consensus_863#1      CGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCACCAGGATGTA 540
                     ************************************************************

consensus_863#0      AAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAAGAGACATAT 549
consensus_863#1      AAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAAGAGACATAT 600
                     ************************************************************

consensus_863#0      CACAAACAAATGATGGGAGGATTCAAAGAAACCAGAGAGGCAGACGAGGGC 600
consensus_863#1      ---------------------------------------------------
                                                                        




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)