These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_863#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [GCAGGTGAATTGTTATACCCCTAAACTGGGCAGTTCAGGTTTCAACTCCCTTGAAAGCTGCCAGAAATTACTTGGAGTGATGCTGCCGAGGACTGAGCTGCTGTAGAGAACACATCAGTGGGTAAGGAACATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATGTCTGGTATCATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGTTTCTGGGAGATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTCTGCAATGACCTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAGCAGCTATCTGAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGTACTGTCGAGCGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCACCAGGATGTAAAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAAGAGACATATCACAAACAAATGATGGGAGGATTCAAAGAAACCAGAGAGGCAGACGAGGGC] [+] EMBL CA591054 [GCAGGTGAATTGTTATACCCCTAAACTGGGCAGTTCAGGTTTCAACTCCCTTGAAAGCTGCCAGAAATTACTTGGAGTGATGCTGCCGAGGACTGAGCTGCTGTAGAGAACACATCAGTGGGTAAGGAACATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATGTCTGGTATCATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGTTTCTGGGAGATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTCTGCAATGACCTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAGCAGCTATCTGAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGTACTGTCGAGCGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCACCAGGATGTAAAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAAGAGACATATCACAAACAAATGATGGGAGGATTCAAAGAAACCAGAGAGGCAGACGAGGGC] consensusID : consensus_863#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [CAGACTTTTATTCAAGAGCTGAGAGGCGTGAGTAGATACCTCTGTCACATTTGCCAGCTTAAAAATAACTGAAGTCTTATTACTGAAGGGTCCATCCGAATTAATCCCCCATCCTGAATCCTGCAAATCTGAGTGCATTCCAGTCCCTACTCAAAAAGGATTTTATATCTGGGTAAGGAACATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATGTCTGGTATCATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGTTTCTGGGAGATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTCTGCAATGACCTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAGCAGCTATCTGAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGTACTGTCGAGCGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCACCAGGATGTAAAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAAGAGACATAT] [+] EMBL CA590253 [CAGACTTTTATTCAAGAGCTGAGAGGCGTGAGTAGATACCTCTGTCACATTTGCCAGCTTAAAAATAACTGAAGTCTTATTACTGAAGGGTCCATCCGAATTAATCCCCCATCCTGAATCCTGCAAATCTGAGTGCATTCCAGTCCCTACTCAAAAAGGATTTTATATCTGGGTAAGGAACATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATGTCTGGTATCATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGTTTCTGGGAGATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTCTGCAATGACCTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAGCAGCTATCTGAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGTACTGTCGAGCGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCACCAGGATGTAAAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAAGAGACATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_863#0 -------------------------------GCAGGTGAAT-TGTTATACCCCTAAACT- 27 consensus_863#1 CAGACTTTTATTCAAGAGCTGAGAGGCGTGAGTAGATACCTCTGTCACATTTGCCAGCTT 60 * ** * * *** * * * ** consensus_863#0 --GGGCAGTTCAGGTTTCAACTCCCTTGAAAGCTGCCAGA--AATTACTTGGAGTGA-TG 82 consensus_863#1 AAAAATAACTGAAGTCTTATTACTGAAGGGTCCATCCGAATTAATCCCCCATCCTGAATC 120 * * * ** * * * * * ** * *** * *** * consensus_863#0 CTGCCGAG--GACTGAGCTGCTGT-----------AGAGAACACATCAGTGGGTAAGGAA 129 consensus_863#1 CTGCAAATCTGAGTGCATTCCAGTCCCTACTCAAAAAGGATTTTATATCTGGGTAAGGAA 180 **** * ** ** * * ** * ** ** *********** consensus_863#0 CATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATGTCTGGTATC 189 consensus_863#1 CATTACTTTCCTGTTGAGCACCACAGCCAAGAAAGAGACCATAGTGACATGTCTGGTATC 240 ************************************************************ consensus_863#0 ATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGTTTCTGGGAG 249 consensus_863#1 ATGTCTGGAATTTTTGATGAAACCGGGAGCCAGGAGGAAACTTCAAACAGTTTCTGGGAG 300 ************************************************************ consensus_863#0 ATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTCTGCAATGAC 309 consensus_863#1 ATCGGCAATTACAAACATACAGTGAAAAGGATTGACGATGGTCATCGGCTCTGCAATGAC 360 ************************************************************ consensus_863#0 CTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAGCAGCTATCT 369 consensus_863#1 CTGATGAGCTGCATCCAGGAACGGGCCAAAATTGAAAAATCCTACTCACAGCAGCTATCT 420 ************************************************************ consensus_863#0 GAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGTACTGTCGAG 429 consensus_863#1 GAATGGTCCAAACGATGGAGACAGTTGATAGACAAAGGGCCTCAGTATGGTACTGTCGAG 480 ************************************************************ consensus_863#0 CGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCACCAGGATGTA 489 consensus_863#1 CGAGCATGGCTGGCACTAATGACAGAGGCCGAAAAGGTGAGTGAGCTCCACCAGGATGTA 540 ************************************************************ consensus_863#0 AAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAAGAGACATAT 549 consensus_863#1 AAAAACTGCCTGATGAATGAGGACTTTGAAAAAGTGAAGAACTGGCAAAAAGAGACATAT 600 ************************************************************ consensus_863#0 CACAAACAAATGATGGGAGGATTCAAAGAAACCAGAGAGGCAGACGAGGGC 600 consensus_863#1 --------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |