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Takifugu rubripes
cluster # 864 cluster # 864       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_864#0 length = 494 sequences # 1  
 consensus_864#1 length = 467 sequences # 1  
consensusID : consensus_864#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence 
                              [GACAGCAGCCATACCTTAAACCTAGTTGATTCGTATACATTAGCGCTCTGAACCCACAGCCAGGATCCTGTTCATCAGACCAGCGCGTCCAGCTCCCATCACGTTTCCTTGACACTAATAATGAAATGCTGGTGAATGAAGAGGAGCCAGAGCAACCGTCCCAGGAAGGTCAAGCCCTGGACGCTCCACCGCCGCCCTACAGCACCATCGCTGCTGCAAATGCAGCGTTCTTTGAATATAAAGAATATGTTTGGAGATTTCCTAACCCCCCTTCCTACAACGTCGCCACCACTTTGCCCACCTATGATGAAGCCGAGAGAAGCAAAGAAGAGGCAGCCATTCCCCTGGTGGCTGGAAGGGTCATGGACGACGACTTTGTGGCCAGGGATGACTTTGAAGATGCTGACCAGCTGAGAATAGGAAACGATGGCATCTTCATGCTGACTTTCTTCATGGCGTTTCTCTTCAACTGGATCGGCTTCTTCTTGCCATTC]

[+] EMBL CA590256             [GACAGCAGCCATACCTTAAACCTAGTTGATTCGTATACATTAGCGCTCTGAACCCACAGCCAGGATCCTGTTCATCAGACCAGCGCGTCCAGCTCCCATCACGTTTCCTTGACACTAATAATGAAATGCTGGTGAATGAAGAGGAGCCAGAGCAACCGTCCCAGGAAGGTCAAGCCCTGGACGCTCCACCGCCGCCCTACAGCACCATCGCTGCTGCAAATGCAGCGTTCTTTGAATATAAAGAATATGTTTGGAGATTTCCTAACCCCCCTTCCTACAACGTCGCCACCACTTTGCCCACCTATGATGAAGCCGAGAGAAGCAAAGAAGAGGCAGCCATTCCCCTGGTGGCTGGAAGGGTCATGGACGACGACTTTGTGGCCAGGGATGACTTTGAAGATGCTGACCAGCTGAGAATAGGAAACGATGGCATCTTCATGCTGACTTTCTTCATGGCGTTTCTCTTCAACTGGATCGGCTTCTTCTTGCCATTC]




>consensus_864#0
GACAGCAGCCATACCTTAAACCTAGTTGATTCGTATACATTAGCGCTCTGAACCCACAGC
CAGGATCCTGTTCATCAGACCAGCGCGTCCAGCTCCCATCACGTTTCCTTGACACTAATA
ATGAAATGCTGGTGAATGAAGAGGAGCCAGAGCAACCGTCCCAGGAAGGTCAAGCCCTGG
ACGCTCCACCGCCGCCCTACAGCACCATCGCTGCTGCAAATGCAGCGTTCTTTGAATATA
AAGAATATGTTTGGAGATTTCCTAACCCCCCTTCCTACAACGTCGCCACCACTTTGCCCA
CCTATGATGAAGCCGAGAGAAGCAAAGAAGAGGCAGCCATTCCCCTGGTGGCTGGAAGGG
TCATGGACGACGACTTTGTGGCCAGGGATGACTTTGAAGATGCTGACCAGCTGAGAATAG
GAAACGATGGCATCTTCATGCTGACTTTCTTCATGGCGTTTCTCTTCAACTGGATCGGCT
TCTTCTTGCCATTC

consensusID : consensus_864#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence 
                              [GCGAGAGGACATTTAAACATTTCGCTCCTCTTCCACGATGGCAGAACCAAACGGCGGCGTCAGATATCAGGAGCTGGTGAATGAAGAGGAGCCAGAGCAACCGTCCCAGGAAGGTCAAGCCCTGGACGCTCCACCGCCGCCCTACAGCACCATCGCTGCTGCAAATGCAGCGTTCTTTGAATATAAAGAAGATGGAGGGAGATTTCCTAACCCCCCTTCCTACAACGTCGCCACCACTTTGCCCACCTATGATGAAGCCGAGAGAAGCAAAGAAGAGGCAGCCATTCCCCTGGTGGCCGGAAGGGTCATGGACGACGACTTTGTGGCCAGGGATGACTTTGAAGATGCTGACCAGCTGAGAATAGGAAACGATGGCATCTTCATGCTGACTTTCTTCATGGCGTTTCTCTTCAACTGGATCGGCTTCTTCTTGTCATTCTGTTTGACATCATCAGCCGCCGGNCGAT]

[+] EMBL FR0058200            [GCGAGAGGACATTTAAACATTTCGCTCCTCTTCCACGATGGCAGAACCAAACGGCGGCGTCAGATATCAGGAGCTGGTGAATGAAGAGGAGCCAGAGCAACCGTCCCAGGAAGGTCAAGCCCTGGACGCTCCACCGCCGCCCTACAGCACCATCGCTGCTGCAAATGCAGCGTTCTTTGAATATAAAGAAGATGGAGGGAGATTTCCTAACCCCCCTTCCTACAACGTCGCCACCACTTTGCCCACCTATGATGAAGCCGAGAGAAGCAAAGAAGAGGCAGCCATTCCCCTGGTGGCCGGAAGGGTCATGGACGACGACTTTGTGGCCAGGGATGACTTTGAAGATGCTGACCAGCTGAGAATAGGAAACGATGGCATCTTCATGCTGACTTTCTTCATGGCGTTTCTCTTCAACTGGATCGGCTTCTTCTTGTCATTCTGTTTGACATCATCAGCCGCCGGNCGAT]




>consensus_864#1
GCGAGAGGACATTTAAACATTTCGCTCCTCTTCCACGATGGCAGAACCAAACGGCGGCGT
CAGATATCAGGAGCTGGTGAATGAAGAGGAGCCAGAGCAACCGTCCCAGGAAGGTCAAGC
CCTGGACGCTCCACCGCCGCCCTACAGCACCATCGCTGCTGCAAATGCAGCGTTCTTTGA
ATATAAAGAAGATGGAGGGAGATTTCCTAACCCCCCTTCCTACAACGTCGCCACCACTTT
GCCCACCTATGATGAAGCCGAGAGAAGCAAAGAAGAGGCAGCCATTCCCCTGGTGGCCGG
AAGGGTCATGGACGACGACTTTGTGGCCAGGGATGACTTTGAAGATGCTGACCAGCTGAG
AATAGGAAACGATGGCATCTTCATGCTGACTTTCTTCATGGCGTTTCTCTTCAACTGGAT
CGGCTTCTTCTTGTCATTCTGTTTGACATCATCAGCCGCCGGNCGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_864#0      GACAGCAGCCATACCTTAAACCTAGTTGATTCGTATACATTAGCGCTCTGAACCCACAGC 60
consensus_864#1      -------------------------------------------------------GCGAG 5
                                                                             *   

consensus_864#0      CAGGATCCTGTTCATCAGACCAGCGCGTCCAGCTCCCATCACGTTTCCTTGACACTAATA 120
consensus_864#1      AGGACATTTAAACATTTCGCTCCTCTTCCACGATGGCAGAACCAAACGGCGGCGTCAGAT 65
                       *     *   ***    *        *  * *  **  **    *   * *   *   

consensus_864#0      ATGAAATGCTGGTGAATGAAGAGGAGCCAGAGCAACCGTCCCAGGAAGGTCAAGCCCTGG 180
consensus_864#1      ATCAGGAGCTGGTGAATGAAGAGGAGCCAGAGCAACCGTCCCAGGAAGGTCAAGCCCTGG 125
                     ** *   *****************************************************

consensus_864#0      ACGCTCCACCGCCGCCCTACAGCACCATCGCTGCTGCAAATGCAGCGTTCTTTGAATATA 240
consensus_864#1      ACGCTCCACCGCCGCCCTACAGCACCATCGCTGCTGCAAATGCAGCGTTCTTTGAATATA 185
                     ************************************************************

consensus_864#0      AAGAATATGTTTGGAGATTTCCTAACCCCCCTTCCTACAACGTCGCCACCACTTTGCCCA 300
consensus_864#1      AAGAAGATGGAGGGAGATTTCCTAACCCCCCTTCCTACAACGTCGCCACCACTTTGCCCA 245
                     ***** ***   ************************************************

consensus_864#0      CCTATGATGAAGCCGAGAGAAGCAAAGAAGAGGCAGCCATTCCCCTGGTGGCTGGAAGGG 360
consensus_864#1      CCTATGATGAAGCCGAGAGAAGCAAAGAAGAGGCAGCCATTCCCCTGGTGGCCGGAAGGG 305
                     **************************************************** *******

consensus_864#0      TCATGGACGACGACTTTGTGGCCAGGGATGACTTTGAAGATGCTGACCAGCTGAGAATAG 420
consensus_864#1      TCATGGACGACGACTTTGTGGCCAGGGATGACTTTGAAGATGCTGACCAGCTGAGAATAG 365
                     ************************************************************

consensus_864#0      GAAACGATGGCATCTTCATGCTGACTTTCTTCATGGCGTTTCTCTTCAACTGGATCGGCT 480
consensus_864#1      GAAACGATGGCATCTTCATGCTGACTTTCTTCATGGCGTTTCTCTTCAACTGGATCGGCT 425
                     ************************************************************

consensus_864#0      TCTTCTTGCCATTC---------------------------- 494
consensus_864#1      TCTTCTTGTCATTCTGTTTGACATCATCAGCCGCCGGNCGAT 467
                     ******** *****


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)