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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_894#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence
[GAAGCCGCTGCACACACTCGGACCAACACGGCCGCAGATCCCCGGACAGCATGTTCTGCAGACGGGCATGGCAGAGGGTCGCGCCCCTGACGCGGAGGACGTTCGAACCCGCAACCAGAAACGTTCGGGCGCGGAAAATGTCTTTCGGGGTTCCTGGTGGCTCCTTCAACACCACATACTTTGTCCTGTGTGGGGGGGGGCTCACAGCTGCCCTCGTCTACGCCTACAAGACCATCAACAGTGATACAGAACGCTATGAGAACAGACTCGCCAGTATGGGCTCCACAGCTAAGGCAGCTCCAGCGGCAGAGGTCACAGAGGTCATCAGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAA]
[+] EMBL CA590748 [GAAGCCGCTGCACACACTCGGACCAACACGGCCGCAGATCCCCGGACAGCATGTTCTGCAGACGGGCATGGCAGAGGGTCGCGCCCCTGACGCGGAGGACGTTCGAACCCGCAACCAGAAACGTTCGGGCGCGGAAAATGTCTTTCGGGGTTCCTGGTGGCTCCTTCAACACCACATACTTTGTCCTGTGTGGGGGGGGGCTCACAGCTGCCCTCGTCTACGCCTACAAGACCATCAACAGTGATACAGAACGCTATGAGAACAGACTCGCCAGTATGGGCTCCACAGCTAAGGCAGCTCCAGCGGCAGAGGTCACAGAGGTCATCAGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAA]
consensusID : consensus_894#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence
[TCAGAAGCCGCTGCACACACTCGGACCAACACGGCCGCAGATCCCCGGACAGCATGTTCTGCAGACGGGCATGGCAGAGGGTCGCGCCCCTGACGCGGAGGACGTTCGAACCCGCAACCAGAAACGCAGTTCGGGCGCGGAAAATGTCTTTCGGGGTTCCTGGTGGCTCCTTCAACACCACATACTTTGTCCTGTGTGGGGGGGGGCTCACAGCTGCCCTCGTCTACGCCTACAAGACCATCAACAGTGATACAGAACGCTATGAGAACAGACTCGCCAGTATGGGCTCCACAGCTAAGGCAGCAGCTCCAGCGGCAGAGGTCACAGAGGTCATCAGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTACGGGAGAGGCAGAGGTCACAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGA]
[+] EMBL CA590769 [TCAGAAGCCGCTGCACACACTCGGACCAACACGGCCGCAGATCCCCGGACAGCATGTTCTGCAGACGGGCATGGCAGAGGGTCGCGCCCCTGACGCGGAGGACGTTCGAACCCGCAACCAGAAACGCAGTTCGGGCGCGGAAAATGTCTTTCGGGGTTCCTGGTGGCTCCTTCAACACCACATACTTTGTCCTGTGTGGGGGGGGGCTCACAGCTGCCCTCGTCTACGCCTACAAGACCATCAACAGTGATACAGAACGCTATGAGAACAGACTCGCCAGTATGGGCTCCACAGCTAAGGCAGCAGCTCCAGCGGCAGAGGTCACAGAGGTCATCAGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTACGGGAGAGGCAGAGGTCACAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_894#0 ---GAAGCCGCTGCACACACTCGGACCAACACGGCCGCAGATCCCCGGACAGCATGTTCT 57
consensus_894#1 TCAGAAGCCGCTGCACACACTCGGACCAACACGGCCGCAGATCCCCGGACAGCATGTTCT 60
*********************************************************
consensus_894#0 GCAGACGGGCATGGCAGAGGGTCGCGCCCCTGACGCGGAGGACGTTCGAACCCGCAACCA 117
consensus_894#1 GCAGACGGGCATGGCAGAGGGTCGCGCCCCTGACGCGGAGGACGTTCGAACCCGCAACCA 120
************************************************************
consensus_894#0 GAAACG---TTCGGGCGCGGAAAATGTCTTTCGGGGTTCCTGGTGGCTCCTTCAACACCA 174
consensus_894#1 GAAACGCAGTTCGGGCGCGGAAAATGTCTTTCGGGGTTCCTGGTGGCTCCTTCAACACCA 180
****** ***************************************************
consensus_894#0 CATACTTTGTCCTGTGTGGGGGGGGGCTCACAGCTGCCCTCGTCTACGCCTACAAGACCA 234
consensus_894#1 CATACTTTGTCCTGTGTGGGGGGGGGCTCACAGCTGCCCTCGTCTACGCCTACAAGACCA 240
************************************************************
consensus_894#0 TCAACAGTGATACAGAACGCTATGAGAACAGACTCGCCAGTATGGGCTCCACAGCTAAGG 294
consensus_894#1 TCAACAGTGATACAGAACGCTATGAGAACAGACTCGCCAGTATGGGCTCCACAGCTAAGG 300
************************************************************
consensus_894#0 CAGC---TCCAGCGGCAGAGGTCACAGAGGTCATCAGGGAGTCCGTCTCTGCTCCTGCAG 351
consensus_894#1 CAGCAGCTCCAGCGGCAGAGGTCACAGAGGTCATCAGGGAGTCCGTCTCTGCTCCTGCAG 360
**** *****************************************************
consensus_894#0 GAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAG 411
consensus_894#1 GAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAG 420
************************************************************
consensus_894#0 AGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAA 471
consensus_894#1 AGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGA-------- 472
****************************************************
consensus_894#0 AGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCATCGGGGAGTCCG 531
consensus_894#1 -GGTCATCGGGGAGTCCGTCTCTGCTCCTACGGGAGAGGCAGAGGTCA------------ 519
**************************** * ****************
consensus_894#0 TCTCTGCTCCTGCAGGAGAGGCAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAG 591
consensus_894#1 ---------------------CAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGA- 557
**************************************
consensus_894#0 AGGCAGAGGTCACAA 606
consensus_894#1 ---------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |