These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_894#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [GAAGCCGCTGCACACACTCGGACCAACACGGCCGCAGATCCCCGGACAGCATGTTCTGCAGACGGGCATGGCAGAGGGTCGCGCCCCTGACGCGGAGGACGTTCGAACCCGCAACCAGAAACGTTCGGGCGCGGAAAATGTCTTTCGGGGTTCCTGGTGGCTCCTTCAACACCACATACTTTGTCCTGTGTGGGGGGGGGCTCACAGCTGCCCTCGTCTACGCCTACAAGACCATCAACAGTGATACAGAACGCTATGAGAACAGACTCGCCAGTATGGGCTCCACAGCTAAGGCAGCTCCAGCGGCAGAGGTCACAGAGGTCATCAGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAA] [+] EMBL CA590748 [GAAGCCGCTGCACACACTCGGACCAACACGGCCGCAGATCCCCGGACAGCATGTTCTGCAGACGGGCATGGCAGAGGGTCGCGCCCCTGACGCGGAGGACGTTCGAACCCGCAACCAGAAACGTTCGGGCGCGGAAAATGTCTTTCGGGGTTCCTGGTGGCTCCTTCAACACCACATACTTTGTCCTGTGTGGGGGGGGGCTCACAGCTGCCCTCGTCTACGCCTACAAGACCATCAACAGTGATACAGAACGCTATGAGAACAGACTCGCCAGTATGGGCTCCACAGCTAAGGCAGCTCCAGCGGCAGAGGTCACAGAGGTCATCAGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAA] consensusID : consensus_894#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence [TCAGAAGCCGCTGCACACACTCGGACCAACACGGCCGCAGATCCCCGGACAGCATGTTCTGCAGACGGGCATGGCAGAGGGTCGCGCCCCTGACGCGGAGGACGTTCGAACCCGCAACCAGAAACGCAGTTCGGGCGCGGAAAATGTCTTTCGGGGTTCCTGGTGGCTCCTTCAACACCACATACTTTGTCCTGTGTGGGGGGGGGCTCACAGCTGCCCTCGTCTACGCCTACAAGACCATCAACAGTGATACAGAACGCTATGAGAACAGACTCGCCAGTATGGGCTCCACAGCTAAGGCAGCAGCTCCAGCGGCAGAGGTCACAGAGGTCATCAGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTACGGGAGAGGCAGAGGTCACAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGA] [+] EMBL CA590769 [TCAGAAGCCGCTGCACACACTCGGACCAACACGGCCGCAGATCCCCGGACAGCATGTTCTGCAGACGGGCATGGCAGAGGGTCGCGCCCCTGACGCGGAGGACGTTCGAACCCGCAACCAGAAACGCAGTTCGGGCGCGGAAAATGTCTTTCGGGGTTCCTGGTGGCTCCTTCAACACCACATACTTTGTCCTGTGTGGGGGGGGGCTCACAGCTGCCCTCGTCTACGCCTACAAGACCATCAACAGTGATACAGAACGCTATGAGAACAGACTCGCCAGTATGGGCTCCACAGCTAAGGCAGCAGCTCCAGCGGCAGAGGTCACAGAGGTCATCAGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTACGGGAGAGGCAGAGGTCACAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_894#0 ---GAAGCCGCTGCACACACTCGGACCAACACGGCCGCAGATCCCCGGACAGCATGTTCT 57 consensus_894#1 TCAGAAGCCGCTGCACACACTCGGACCAACACGGCCGCAGATCCCCGGACAGCATGTTCT 60 ********************************************************* consensus_894#0 GCAGACGGGCATGGCAGAGGGTCGCGCCCCTGACGCGGAGGACGTTCGAACCCGCAACCA 117 consensus_894#1 GCAGACGGGCATGGCAGAGGGTCGCGCCCCTGACGCGGAGGACGTTCGAACCCGCAACCA 120 ************************************************************ consensus_894#0 GAAACG---TTCGGGCGCGGAAAATGTCTTTCGGGGTTCCTGGTGGCTCCTTCAACACCA 174 consensus_894#1 GAAACGCAGTTCGGGCGCGGAAAATGTCTTTCGGGGTTCCTGGTGGCTCCTTCAACACCA 180 ****** *************************************************** consensus_894#0 CATACTTTGTCCTGTGTGGGGGGGGGCTCACAGCTGCCCTCGTCTACGCCTACAAGACCA 234 consensus_894#1 CATACTTTGTCCTGTGTGGGGGGGGGCTCACAGCTGCCCTCGTCTACGCCTACAAGACCA 240 ************************************************************ consensus_894#0 TCAACAGTGATACAGAACGCTATGAGAACAGACTCGCCAGTATGGGCTCCACAGCTAAGG 294 consensus_894#1 TCAACAGTGATACAGAACGCTATGAGAACAGACTCGCCAGTATGGGCTCCACAGCTAAGG 300 ************************************************************ consensus_894#0 CAGC---TCCAGCGGCAGAGGTCACAGAGGTCATCAGGGAGTCCGTCTCTGCTCCTGCAG 351 consensus_894#1 CAGCAGCTCCAGCGGCAGAGGTCACAGAGGTCATCAGGGAGTCCGTCTCTGCTCCTGCAG 360 **** ***************************************************** consensus_894#0 GAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAG 411 consensus_894#1 GAGAGGCAGAGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAG 420 ************************************************************ consensus_894#0 AGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCACAA 471 consensus_894#1 AGGTCACAAAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGA-------- 472 **************************************************** consensus_894#0 AGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAGAGGCAGAGGTCATCGGGGAGTCCG 531 consensus_894#1 -GGTCATCGGGGAGTCCGTCTCTGCTCCTACGGGAGAGGCAGAGGTCA------------ 519 **************************** * **************** consensus_894#0 TCTCTGCTCCTGCAGGAGAGGCAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGAG 591 consensus_894#1 ---------------------CAGAGGTCATCGGGGAGTCCGTCTCTGCTCCTGCAGGA- 557 ************************************** consensus_894#0 AGGCAGAGGTCACAA 606 consensus_894#1 --------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |