|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[ATGTAAACAAGAGAAGACAGTCGAGGGCAGCAGGGATCGAATCGGCCGGTACAGCCGTAAATGACAACTGTTCCGTACTCTTAAACAGCTGACATGGGTCTGCCTGTCACCATTAAAGTCAATTTCCGGGGGAACGTGAAGAGATTTCTGGCCCAAGATTAGGATAAACTGGAGTGGGAATCCGTGGAAGCCTGGGTAAGCTGCTAGCCGAGTGCGTTGGCTAAACGCTGGCGCAGTTAGGTGAAAAGCAGGCCCAGACGTGGCCTACGCACGCCAGCACCAGAACACGCACAGGACAGGGAAACCTGTGCGATCAGGGGGTCGTGCGTGGGAATGTGCACGGCAGACGGGTCAAGGGTTCCCGTCCCGGGTTTGCACCGGATGTGGGGGCTTTTGGGGGTTCACGTGTTGGGGAAGTTTGGTCGTTTCTGGCCAAAGATCAGGTTAATTCTGCAATGACTGATATTCTGAACACTTTTTGCAGATTAAAGCCTCTTTTGGTATCAACCATTTTCAAGTCAAGTACTTTGATGAAGATAACGAAGAGGTAAAACTTAAAATTAATGGCTTGTCTGTTTTAAATGGACCTTTTTCCTGATCTAATCTTATTC]
[+] EMBL CA591132 [ATGTAAACAAGAGAAGACAGTCGAGGGCAGCAGGGATCGAATCGGCCGGTACAGCCGTAAATGACAACTGTTCCGTACTCTTAAACAGCTGACATGGGTCTGCCTGTCACCATTAAAGTCAATTTCCGGGGGAACGTGAAGAGATTTCTGGCCCAAGATTAGGATAAACTGGAGTGGGAATCCGTGGAAGCCTGGGTAAGCTGCTAGCCGAGTGCGTTGGCTAAACGCTGGCGCAGTTAGGTGAAAAGCAGGCCCAGACGTGGCCTACGCACGCCAGCACCAGAACACGCACAGGACAGGGAAACCTGTGCGATCAGGGGGTCGTGCGTGGGAATGTGCACGGCAGACGGGTCAAGGGTTCCCGTCCCGGGTTTGCACCGGATGTGGGGGCTTTTGGGGGTTCACGTGTTGGGGAAGTTTGGTCGTTTCTGGCCAAAGATCAGGTTAATTCTGCAATGACTGATATTCTGAACACTTTTTGCAGATTAAAGCCTCTTTTGGTATCAACCATTTTCAAGTCAAGTACTTTGATGAAGATAACGAAGAGGTAAAACTTAAAATTAATGGCTTGTCTGTTTTAAATGGACCTTTTTCCTGATCTAATCTTATTC]
consensusID : consensus_913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence
[TGTAAACAAGAGAAGACAGTCGAGGGCAGCAGGGATCGAATCGGCCGGTACAGCCGTAAATGACAACTGTTCCGTACTCTTAAACAGCTGACATGGGTCTGCCTGTCACCATTAAAGTCAATTTCCGGGGGAACGTGAAGAGATTTCTGGCCCAAGATTTGGATAAACTGGAGTGGGAATCCGTGGAAGCCTGGATTAAAGCCTCTTTTGGTATCAACCATTTTCAAGTCAAGTACTTTGATGAAGATAACGAAGAGATCTGCATAAACAGTCAAGATGAATATGAAGAAGCCATCAAGAGCGCCGAGAAGCAGGGCAACCAGTTACACATGAACGTGTACAAGATGAAAGGTCAGGCGTGCGGCGGTCCGCTGAAGACTGAGGTGAAGGAGCTGAAAGGAGACCTCCGGCCCGCTCCTCCGTACCCCTCACGGGTCAAGACGGTGGACAAGGGCACGCAGGTCACCCCGGAGAGGGAAGCTGTGGCGGTCAAGGACACCAAGGGCAGCAAACCCGAAGACGAGCCGCCTCCCATGTGGTTCCGGTCCTACATGGAGAAGTTTANAGACGAGGTGGTGAAAGAG]
[+] EMBL CA591056 [TGTAAACAAGAGAAGACAGTCGAGGGCAGCAGGGATCGAATCGGCCGGTACAGCCGTAAATGACAACTGTTCCGTACTCTTAAACAGCTGACATGGGTCTGCCTGTCACCATTAAAGTCAATTTCCGGGGGAACGTGAAGAGATTTCTGGCCCAAGATTTGGATAAACTGGAGTGGGAATCCGTGGAAGCCTGGATTAAAGCCTCTTTTGGTATCAACCATTTTCAAGTCAAGTACTTTGATGAAGATAACGAAGAGATCTGCATAAACAGTCAAGATGAATATGAAGAAGCCATCAAGAGCGCCGAGAAGCAGGGCAACCAGTTACACATGAACGTGTACAAGATGAAAGGTCAGGCGTGCGGCGGTCCGCTGAAGACTGAGGTGAAGGAGCTGAAAGGAGACCTCCGGCCCGCTCCTCCGTACCCCTCACGGGTCAAGACGGTGGACAAGGGCACGCAGGTCACCCCGGAGAGGGAAGCTGTGGCGGTCAAGGACACCAAGGGCAGCAAACCCGAAGACGAGCCGCCTCCCATGTGGTTCCGGTCCTACATGGAGAAGTTTANAGACGAGGTGGTGAAAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_913#0 ATGTAAACAAGAGAAGACAGTCGAGGGCAGCAGGGATCGAATCGGCCGGTACAGCCGTAA 60
consensus_913#1 -TGTAAACAAGAGAAGACAGTCGAGGGCAGCAGGGATCGAATCGGCCGGTACAGCCGTAA 59
***********************************************************
consensus_913#0 ATGACAACTGTTCCGTACTCTTAAACAGCTGACATGGGTCTGCCTGTCACCATTAAAGTC 120
consensus_913#1 ATGACAACTGTTCCGTACTCTTAAACAGCTGACATGGGTCTGCCTGTCACCATTAAAGTC 119
************************************************************
consensus_913#0 AATTTCCGGGGGAACGTGAAGAGATTTCTGGCCCAAGATTAGGATAAACTGGAGTGGGAA 180
consensus_913#1 AATTTCCGGGGGAACGTGAAGAGATTTCTGGCCCAAGATTTGGATAAACTGGAGTGGGAA 179
**************************************** *******************
consensus_913#0 TCCGTGGAAGCCTGGGT--AAGCTGCTAGCCGAGTGCGTTGGCTAAACGCTGGCGCAGTT 238
consensus_913#1 TCCGTGGAAGCCTGGATTAAAGCCTCTTTTGGTATCAACCATTTTCAAGTCAA-GTACTT 238
*************** * **** ** * * * * * * * **
consensus_913#0 AGGTGAAAAGCAGGCCCAGACGTGGCCTACGCACGCCAGCACCAGAACACGCACAGGACA 298
consensus_913#1 TGATGAAGATAACGAAGAGATCTG-CATAAACA-GTCAAGAT--GAATATGAAGAAGCCA 294
* **** * * * *** ** * ** ** * ** * *** * * * * * **
consensus_913#0 GGGAAACCTGTGCGATCAGGGGGTCGTGCGTGGGAATGTGCACGGCAGACGGGTCAAGGG 358
consensus_913#1 TCAAGAGCGCCGAGA--AGCAGGGCAACCAGTTACACATGAACGTGTACAAGATGAAAGG 352
* * * * ** ** ** * * * ** *** * * ** **
consensus_913#0 TTCCCGTCCCGGGTTTGCACCGGATGTGGGGGCTTTTGGGGGTTCACGTGTTGGGGAAGT 418
consensus_913#1 T--------CAGGCGTGCGGCGGT--------CCGCTGAAGACTGAGGTGAAGGAGCTGA 396
* * ** *** *** * ** * * * *** ** * *
consensus_913#0 TTGGTCGTTTCTGGCCAAAGATCAGGTTAATTCTGCAATGACTGATATTCTGAACACTTT 478
consensus_913#1 AAGGAGACCTCCGGCCC--GCTCCTCCGTACCCCTCACGGGTCAAGACGGTGGACAA--- 451
** ** **** * ** * * ** * * * ** ***
consensus_913#0 TTGCAGATTAAAGCCTCTTTTGGTATCAACCATTTTCAAGTCAAGTACTTTGATGAAGAT 538
consensus_913#1 --GGGCACGCAGGTCACCCCGGAGAGGGAAGCTGTGGCGGTCAAGGACACCAAGGGCAGC 509
* * * * * * * * * * * ****** ** * *
consensus_913#0 AACGAAGAGGTAAAACTTAAAATTAATGGCTTGTCTGTTTTAAATGGACCTTTTTCCTGA 598
consensus_913#1 AAACCCGAAG-ACGAGCCGCCTCCCATGTGGTTCCGGTCCTACATGGAGAAGTTTANAGA 568
** ** * * * *** * * ** ** ***** *** **
consensus_913#0 TCTAATCTTATTC--- 611
consensus_913#1 CGAGGTGGTGAAAGAG 584
* *
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |