|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence
[CAGTTTTTGGACGAGTCGATGTTTATCTCCTTCGCATAATCGGTCCCACACCGACGAGTCACACCGAGCTCCATCTGTCCCCCCTGGGTTCGCTCATTTCCGGGTAGTCCGGCTGCTCCAGGCGCTGCAGGAATGTCCGGTAACAATGGCTCGGCTGTCAGCCTCCTGTCGTACGAGACTCTGGTTCATGCTGTGGCAGGTGCTGTGGGGAGTGTGACAGCTATGACCGTCTTCTTCCCTCTGGAGACGGCCAAAAGCAGGCTGCAGGTGGATGAGAAGCGGAAATCTAAAACTACACCCGTCATTCTGGCTGAGATAGCAAAGGAAGAAGGCCTTCTGTCTCTGTACAGAGGCTGGTTGCCCGTCATCTCCAGCCTTTGTTGCTCCAACTTTGTCTACTTCTACACCTTCAACACACTGAAAAAGCTGATGATATCTGGTCCAAATGGGTCCAGACCCAGCAAAGATCTGCTAATTGGGATTGTATCAGGGGCCGTGAACGTGATCCTCACTACTCCCATGCGGGTGGTCAACACTCGACTGAAGCTCCAGGGGGCCAAGTTCAGAAATGAAGACCTTCATCAGACCCACTATACAGGCATATTTGATGCGTTCACTCAGATTATA]
[+] EMBL CA591084 [CAGTTTTTGGACGAGTCGATGTTTATCTCCTTCGCATAATCGGTCCCACACCGACGAGTCACACCGAGCTCCATCTGTCCCCCCTGGGTTCGCTCATTTCCGGGTAGTCCGGCTGCTCCAGGCGCTGCAGGAATGTCCGGTAACAATGGCTCGGCTGTCAGCCTCCTGTCGTACGAGACTCTGGTTCATGCTGTGGCAGGTGCTGTGGGGAGTGTGACAGCTATGACCGTCTTCTTCCCTCTGGAGACGGCCAAAAGCAGGCTGCAGGTGGATGAGAAGCGGAAATCTAAAACTACACCCGTCATTCTGGCTGAGATAGCAAAGGAAGAAGGCCTTCTGTCTCTGTACAGAGGCTGGTTGCCCGTCATCTCCAGCCTTTGTTGCTCCAACTTTGTCTACTTCTACACCTTCAACACACTGAAAAAGCTGATGATATCTGGTCCAAATGGGTCCAGACCCAGCAAAGATCTGCTAATTGGGATTGTATCAGGGGCCGTGAACGTGATCCTCACTACTCCCATGCGGGTGGTCAACACTCGACTGAAGCTCCAGGGGGCCAAGTTCAGAAATGAAGACCTTCATCAGACCCACTATACAGGCATATTTGATGCGTTCACTCAGATTATA]
consensusID : consensus_914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence
[CCCACACCGACGAGTCACACCGAGCTCCATCTGTCCCCCCTGGGGTGGCTCATTTCCGGGTAGTCCGGCTGCTCCAGCCGCTGCAGGAATGTCCGGTAACAATGGCTCGGCTGTCAGCCTCCTGTCGTACGAGACTCTGGTTCATGCTGTGGCAGGTGCTGTGGGGAGTGTGACAGCTATGACCGTCTCCTTCCCTCTGGAGACGGCCAAAAGCAGGCTGCAGGGTTTGTTATTCAGCATGCTGCCAGGTACATCGTGATACAGCTACATTTTATCTACACGGGGCTATTTTTCTAACCGAAGCATTAACTCTAGGATTAGGGGATGAGAAGCGGAAATCTAAAACTACACCCGGCATTCTGGCTGAGATAGCAAAAGGAAGAAGGCCTT]
[+] EMBL FR0059398 [CCCACACCGACGAGTCACACCGAGCTCCATCTGTCCCCCCTGGGGTGGCTCATTTCCGGGTAGTCCGGCTGCTCCAGCCGCTGCAGGAATGTCCGGTAACAATGGCTCGGCTGTCAGCCTCCTGTCGTACGAGACTCTGGTTCATGCTGTGGCAGGTGCTGTGGGGAGTGTGACAGCTATGACCGTCTCCTTCCCTCTGGAGACGGCCAAAAGCAGGCTGCAGGGTTTGTTATTCAGCATGCTGCCAGGTACATCGTGATACAGCTACATTTTATCTACACGGGGCTATTTTTCTAACCGAAGCATTAACTCTAGGATTAGGGGATGAGAAGCGGAAATCTAAAACTACACCCGGCATTCTGGCTGAGATAGCAAAAGGAAGAAGGCCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_914#0 CAGTTTTTGGACGAGTCGATGTTTATCTCCTTCGCATAATCGGTCCCACACCGACGAGTC 60
consensus_914#1 --------------------------------------------CCCACACCGACGAGTC 16
****************
consensus_914#0 ACACCGAGCTCCATCTGTCCCCCCTGGGTTCGCTCATTTCCGGGTAGTCCGGCTGCTCCA 120
consensus_914#1 ACACCGAGCTCCATCTGTCCCCCCTGGGGTGGCTCATTTCCGGGTAGTCCGGCTGCTCCA 76
**************************** * *****************************
consensus_914#0 GGCGCTGCAGGAATGTCCGGTAACAATGGCTCGGCTGTCAGCCTCCTGTCGTACGAGACT 180
consensus_914#1 GCCGCTGCAGGAATGTCCGGTAACAATGGCTCGGCTGTCAGCCTCCTGTCGTACGAGACT 136
* **********************************************************
consensus_914#0 CTGGTTCATGCTGTGGCAGGTGCTGTGGGGAGTGTGACAGCTATGACCGTCTTCTTCCCT 240
consensus_914#1 CTGGTTCATGCTGTGGCAGGTGCTGTGGGGAGTGTGACAGCTATGACCGTCTCCTTCCCT 196
**************************************************** *******
consensus_914#0 CTGGAGACGGCCAAAAGCAGGCTGCAGGTGGATGAGAAGCGGAAATCTAA-AACTACACC 299
consensus_914#1 CTGGAGACGGCCAAAAGCAGGCTGCAGG-GTTTGTTATTCAGCATGCTGCCAGGTACATC 255
**************************** * ** * * * * ** * **** *
consensus_914#0 CGTCATTCTGGCTGAGATAGCAAAGGAAGAAGGCCTTCTGTCTCTGTACAGAGGCTGGTT 359
consensus_914#1 -GTGATAC-AGCT-ACATTTTATCTACACGGGGCTATTTTTCTA---ACCGAAGC----- 304
** ** * *** * ** * * *** * * *** ** ** **
consensus_914#0 GCCCGTCATCTCCAGCCTTTGTTGCTCCAACTTTG---TCTACTTCTACACCTTCAACAC 416
consensus_914#1 ----ATTAACTCTAGGATTAGGGGATGAGAAGCGGAAATCTAAAACTACACC--CGGCAT 358
* * *** ** ** * * * * * **** ******* * **
consensus_914#0 ACTGAAAAAGCTGATGATATCTGGTCCAAATGGGTCCAGACCCAGCAAAGATCTGCTAAT 476
consensus_914#1 TCTG-----GCTGA-GATAGCAAAAGGAAGAAGGCCTT---------------------- 390
*** ***** **** * ** ** *
consensus_914#0 TGGGATTGTATCAGGGGCCGTGAACGTGATCCTCACTACTCCCATGCGGGTGGTCAACAC 536
consensus_914#1 ------------------------------------------------------------
consensus_914#0 TCGACTGAAGCTCCAGGGGGCCAAGTTCAGAAATGAAGACCTTCATCAGACCCACTATAC 596
consensus_914#1 ------------------------------------------------------------
consensus_914#0 AGGCATATTTGATGCGTTCACTCAGATTATA 627
consensus_914#1 -------------------------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |