These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 340 fasta sequence [GATATCTTTGCCAGCTCTTAGTGGGTCTAGTGGACGCACTTTCGGAGGCCCCAGCGCCTCTCCCACCTCCGGGACCACCTCCCCTGGACATTGAAGCTGACGTCACTGTTGAAACACTGGAGAGAATCTCGCGCCATGAAGAAATTTCCCAGAAGTCACCAAGCTCGCCACCTTCTGCTTTAAGACGACAGCAAGCTTCCAGGAAAAGCAGAGAAACAAAGACCAAGGGTCGTACGTCACAGAGGGTGTCTAAAGCATCAGAAGCAATATCGAAAAAAGAATGTGTCCAAAAGAAGCCAGTGGTTTTTGAGCTCCCCAAACTGAAGAGTTAGTACGGAGC] [+] EMBL FR0062209 [GATATCTTTGCCAGCTCTTAGTGGGTCTAGTGGACGCACTTTCGGAGGCCCCAGCGCCTCTCCCACCTCCGGGACCACCTCCCCTGGACATTGAAGCTGACGTCACTGTTGAAACACTGGAGAGAATCTCGCGCCATGAAGAAATTTCCCAGAAGTCACCAAGCTCGCCACCTTCTGCTTTAAGACGACAGCAAGCTTCCAGGAAAAGCAGAGAAACAAAGACCAAGGGTCGTACGTCACAGAGGGTGTCTAAAGCATCAGAAGCAATATCGAAAAAAGAATGTGTCCAAAAGAAGCCAGTGGTTTTTGAGCTCCCCAAACTGAAGAGTTAGTACGGAGC] consensusID : consensus_928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 206 fasta sequence [AATCAGTGCCAGGTGGGGGGAGGGTCTACTGAACCACACCCGGAGGCCCCACCTCCTCTGCCACCTCCGGGACCACCTCCCCTGGACATTGAAGCTGACGTCACTGTTGAAACACTGAAGAGAATCTTGCGCCATGAAGAAATTTCCCAGAAGTCACCAAGCTCGCCACCTTTTGCTTTAAGACGACAGCAAGCTTCCAGGAAAAG] [+] EMBL FR0062150 [AATCAGTGCCAGGTGGGGGGAGGGTCTACTGAACCACACCCGGAGGCCCCACCTCCTCTGCCACCTCCGGGACCACCTCCCCTGGACATTGAAGCTGACGTCACTGTTGAAACACTGAAGAGAATCTTGCGCCATGAAGAAATTTCCCAGAAGTCACCAAGCTCGCCACCTTTTGCTTTAAGACGACAGCAAGCTTCCAGGAAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_928#0 GATATCTTTGCCAGCTCTTAGT-GGGTCTAGTGGACGCACTTTCGGAGGCCCCAGCGCCT 59 consensus_928#1 --AATCAGTGCCAGGTGGGGGGAGGGTCTACTGAAC-CACACCCGGAGGCCCCACCTCCT 57 *** ****** * * ******* ** ** *** *********** * *** consensus_928#0 CTCCCACCTCCGGGACCACCTCCCCTGGACATTGAAGCTGACGTCACTGTTGAAACACTG 119 consensus_928#1 CTGCCACCTCCGGGACCACCTCCCCTGGACATTGAAGCTGACGTCACTGTTGAAACACTG 117 ** ********************************************************* consensus_928#0 GAGAGAATCTCGCGCCATGAAGAAATTTCCCAGAAGTCACCAAGCTCGCCACCTTCTGCT 179 consensus_928#1 AAGAGAATCTTGCGCCATGAAGAAATTTCCCAGAAGTCACCAAGCTCGCCACCTTTTGCT 177 ********* ******************************************** **** consensus_928#0 TTAAGACGACAGCAAGCTTCCAGGAAAAGCAGAGAAACAAAGACCAAGGGTCGTACGTCA 239 consensus_928#1 TTAAGACGACAGCAAGCTTCCAGGAAAAG------------------------------- 206 ***************************** consensus_928#0 CAGAGGGTGTCTAAAGCATCAGAAGCAATATCGAAAAAAGAATGTGTCCAAAAGAAGCCA 299 consensus_928#1 ------------------------------------------------------------ consensus_928#0 GTGGTTTTTGAGCTCCCCAAACTGAAGAGTTAGTACGGAGC 340 consensus_928#1 ----------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |