These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_934#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [ACAGATGCGAGAGATCTGAAGATGACCACCATCATGACCCCGATGGTCCTCTTCCTGCTCTTCCTCTCTTTGACAGCCATCCCTCCAGTAAGTCTGACATCTAGTTGTTTTTTGTTTGTTTTTTTTGGATAGTAAATTGTTTAATATTTCAGCCAACACTCAAAATAAAATGTAAAACTGTGCTGTTCTGTTAAAGAGCGCAGCTCAAGAGAAACTTGGAGATGATGGTAATATTGAAGATTCATTTGGTTTACGTCTTACAGGAGACTATTTTTATTACATTTTACAATTTGTTTACTCAATCTTCTGATTTCTGTTTGACCCAGACGAGTCTGTTGACATCTCTGCCATCATCTCCGAAGCCAACAAGAACATTACAGCAGGTATCGAAGACGGCGATGTTGCCCCACCGAGAAAAAGGAACGCGAGTCCCTGCACATCCAGAGGCTGCAAGTGGAGAACATCTCGAGGTTACGTCCGGATCCCCTACGTTATCTCTTCTTCATACTCCAGCAGAGAGCGCAGCAACATTATTGGGGGCATGAACATTTTCAACCGCTACACGTGTGTCCGATTCTTTCCGAAGAGGGGGTGGGACTTCTTC] [+] EMBL CA591277 [ACAGATGCGAGAGATCTGAAGATGACCACCATCATGACCCCGATGGTCCTCTTCCTGCTCTTCCTCTCTTTGACAGCCATCCCTCCAGTAAGTCTGACATCTAGTTGTTTTTTGTTTGTTTTTTTTGGATAGTAAATTGTTTAATATTTCAGCCAACACTCAAAATAAAATGTAAAACTGTGCTGTTCTGTTAAAGAGCGCAGCTCAAGAGAAACTTGGAGATGATGGTAATATTGAAGATTCATTTGGTTTACGTCTTACAGGAGACTATTTTTATTACATTTTACAATTTGTTTACTCAATCTTCTGATTTCTGTTTGACCCAGACGAGTCTGTTGACATCTCTGCCATCATCTCCGAAGCCAACAAGAACATTACAGCAGGTATCGAAGACGGCGATGTTGCCCCACCGAGAAAAAGGAACGCGAGTCCCTGCACATCCAGAGGCTGCAAGTGGAGAACATCTCGAGGTTACGTCCGGATCCCCTACGTTATCTCTTCTTCATACTCCAGCAGAGAGCGCAGCAACATTATTGGGGGCATGAACATTTTCAACCGCTACACGTGTGTCCGATTCTTTCCGAAGAGGGGGTGGGACTTCTTC] consensusID : consensus_934#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [ACAGCCATCCCTCCAAGCGCAGCTCAAGAGAAACTTGGAGATGATGACGAGTCTGTTGACATCTCTGCCATCATCTCCGAAGCCAACAAGAACATTACAGCAGGTATCGAAGACGGCGATGTTGCCCCACCGAGAAAAAGGAACGCGAGTCCCTGCACATCCAGAGGCTGCAAGTGGAGAACATCTCGAGGGTACGTCCGGATCCCCTACGGTATCTCCTCTTCATACTCCAGCAGAGAGCGCAGCACCCATTATTGGGNGCCATGAACATTTTCAAACCGCTACACGGG] [+] EMBL FR0058942 [ACAGCCATCCCTCCAAGCGCAGCTCAAGAGAAACTTGGAGATGATGACGAGTCTGTTGACATCTCTGCCATCATCTCCGAAGCCAACAAGAACATTACAGCAGGTATCGAAGACGGCGATGTTGCCCCACCGAGAAAAAGGAACGCGAGTCCCTGCACATCCAGAGGCTGCAAGTGGAGAACATCTCGAGGGTACGTCCGGATCCCCTACGGTATCTCCTCTTCATACTCCAGCAGAGAGCGCAGCACCCATTATTGGGNGCCATGAACATTTTCAAACCGCTACACGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_934#0 ACAGATGCGAGAGATCTGAAGATGACCACCATCATGACCCCGATGGTCCTCTTCCTGCTC 60 consensus_934#1 ------------------------------------------------------------ consensus_934#0 TTCCTCTCTTTGACAGCCATCCCTCCAGTAAGTCTGACATCTAGTTGTTTTTTGTTTGTT 120 consensus_934#1 ------------------------------------------------------------ consensus_934#0 TTTTTTGGATAGTAAATTGTTTAATATTTCAGCCAACACTCAAAATAAAATGTAAAACTG 180 consensus_934#1 ------------------------------------------------------------ consensus_934#0 TGCTGTTCTGTTAAAGAGCGCAGCTCAAGAGAAACTTGGAGATGATGGTAATATTGAAGA 240 consensus_934#1 ------------------------------------------------------------ consensus_934#0 TTCATTTGGTTTACGTCTTACAGGAGACTATTTTTATTACATTTTACAATTTGTTTA--C 298 consensus_934#1 ------------------------------------------ACAGCCATCCCTCCAAGC 18 * ** * * * consensus_934#0 TCAATCTTCTGATTTCTGTTTGACCCAGACGAGTCTGTTGACATCTCTGCCATCATCTCC 358 consensus_934#1 GCAGCTCAAGAGAAACTTGGAGATGATGACGAGTCTGTTGACATCTCTGCCATCATCTCC 78 ** ** ** ********************************* consensus_934#0 GAAGCCAACAAGAACATTACAGCAGGTATCGAAGACGGCGATGTTGCCCCACCGAGAAAA 418 consensus_934#1 GAAGCCAACAAGAACATTACAGCAGGTATCGAAGACGGCGATGTTGCCCCACCGAGAAAA 138 ************************************************************ consensus_934#0 AGGAACGCGAGTCCCTGCACATCCAGAGGCTGCAAGTGGAGAACATCTCGAGGTTACGTC 478 consensus_934#1 AGGAACGCGAGTCCCTGCACATCCAGAGGCTGCAAGTGGAGAACATCTCGAGGGTACGTC 198 ***************************************************** ****** consensus_934#0 CGGATCCCCTACGTTATCTCTTCTTCATACTCCAGCAGAGAGCGCAGCAAC-ATTATTGG 537 consensus_934#1 CGGATCCCCTACGGTATCTCCTCTTCATACTCCAGCAGAGAGCGCAGCACCCATTATTGG 258 ************* ****** **************************** * ******** consensus_934#0 GGGC-ATGAACATTTTCAA-CCGCTACACGTGTGTCCGATTCTTTCCGAAGAGGGGGTGG 595 consensus_934#1 GNGCCATGAACATTTTCAAACCGCTACACGGG---------------------------- 290 * ** ************** ********** * consensus_934#0 GACTTCTTC 604 consensus_934#1 --------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |