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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_940#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence
[CCGGCCTGGGATGTGACTCTAGGGCCGCACGGAAAACTCAGACGAACCACAGAGACCAGAGTGTAACCAAAGAGCAAGAAAATCGATCCGGGTGGAATCAGCTGTACCTGCTCTCAGTCAGGATGGAGGACGTGGAGACGGAGCTAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACTTCATCACAGTGGAGTTGGACACACAACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTGGGTCCAAATTCACTATTTCCTGCGTGAAGAAGGACTCCGACGACCCGGCAGACCTAACTGCTGACCAGCTGAAGATCGAGGCGGACGAGGCGTTTTTTTGCACCCTATGAAGAAGTCTACCCCTGCGAGGTGACCGAGCAAAGCGTGGAGATCAAGACGGACTCGGACGAGGAAGAAGTGGACGAGCAAGAGGTGCTGGTGGAGGCGGGGAGCAGCCAGCTGGATGGCGACATGGACTCGGACCAGGCCGACTATGAGCCAGACGAGCGCCAGTACCGCTGCAGCTACTGCGGGAAGTGTTACAGCCACGCCTCCAGCCTGTACCGCCACCAGCAGACGCACAGTGGTAAAAGCAGCGGACTG]
[+] EMBL CA591355 [CCGGCCTGGGATGTGACTCTAGGGCCGCACGGAAAACTCAGACGAACCACAGAGACCAGAGTGTAACCAAAGAGCAAGAAAATCGATCCGGGTGGAATCAGCTGTACCTGCTCTCAGTCAGGATGGAGGACGTGGAGACGGAGCTAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACTTCATCACAGTGGAGTTGGACACACAACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTGGGTCCAAATTCACTATTTCCTGCGTGAAGAAGGACTCCGACGACCCGGCAGACCTAACTGCTGACCAGCTGAAGATCGAGGCGGACGAGGCGTTTTTTTGCACCCTATGAAGAAGTCTACCCCTGCGAGGTGACCGAGCAAAGCGTGGAGATCAAGACGGACTCGGACGAGGAAGAAGTGGACGAGCAAGAGGTGCTGGTGGAGGCGGGGAGCAGCCAGCTGGATGGCGACATGGACTCGGACCAGGCCGACTATGAGCCAGACGAGCGCCAGTACCGCTGCAGCTACTGCGGGAAGTGTTACAGCCACGCCTCCAGCCTGTACCGCCACCAGCAGACGCACAGTGGTAAAAGCAGCGGACTG]
consensusID : consensus_940#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence
[CCCATCAAAATTCTGAGCTGTACCTCCTCTCAGTCAGGATGGAGGACGTGGAGACGGAGCTAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACTTCATCACAGTGGAGTTGGACACACAACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTGGGTCCAAATTCACTATTTCTTGCGTGAAGAAGGACTCCGACGACCCGGCAGACCTAACTGCCGACCAGCTGAAGATCGAGGCGGACGAGGCGTTTTTTGCACCCTATGAAGAAGTCTACCCCTGCGAGGTGACCGAGCAAAGCGTGGAGAACAAG]
[+] EMBL FR0060458 [CCCATCAAAATTCTGAGCTGTACCTCCTCTCAGTCAGGATGGAGGACGTGGAGACGGAGCTAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACTTCATCACAGTGGAGTTGGACACACAACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTGGGTCCAAATTCACTATTTCTTGCGTGAAGAAGGACTCCGACGACCCGGCAGACCTAACTGCCGACCAGCTGAAGATCGAGGCGGACGAGGCGTTTTTTGCACCCTATGAAGAAGTCTACCCCTGCGAGGTGACCGAGCAAAGCGTGGAGAACAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_940#0 CCGGCCTGGGATGTGACTCTAGGGCCGCACGGAAAACTCAGACGAACCACAGAGACCAGA 60
consensus_940#1 ------------------------------------------------------------
consensus_940#0 GTGTAACCAAAGAGCAAGAAAATCGATCCGGGTGGAATCAGCTGTACCTGCTCTCAGTCA 120
consensus_940#1 ----------------------CCCATCAAAATTC--TGAGCTGTACCTCCTCTCAGTCA 36
* *** * * ********** **********
consensus_940#0 GGATGGAGGACGTGGAGACGGAGCTAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACT 180
consensus_940#1 GGATGGAGGACGTGGAGACGGAGCTAGCGGTCACTGAAACAGATGCTCTGGGTGCTGACT 96
************************************************************
consensus_940#0 TCATCACAGTGGAGTTGGACACACAACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTG 240
consensus_940#1 TCATCACAGTGGAGTTGGACACACAACCCATCGAGTATGTGGTCAAGTGGGCCGATGTTG 156
************************************************************
consensus_940#0 GGTCCAAATTCACTATTTCCTGCGTGAAGAAGGACTCCGACGACCCGGCAGACCTAACTG 300
consensus_940#1 GGTCCAAATTCACTATTTCTTGCGTGAAGAAGGACTCCGACGACCCGGCAGACCTAACTG 216
******************* ****************************************
consensus_940#0 CTGACCAGCTGAAGATCGAGGCGGACGAGGCGTTTTTTTGCACCCTATGAAGAAGTCTAC 360
consensus_940#1 CCGACCAGCTGAAGATCGAGGCGGACGAGGCGTTTTTT-GCACCCTATGAAGAAGTCTAC 275
* ************************************ *********************
consensus_940#0 CCCTGCGAGGTGACCGAGCAAAGCGTGGAGATCAAGACGGACTCGGACGAGGAAGAAGTG 420
consensus_940#1 CCCTGCGAGGTGACCGAGCAAAGCGTGGAGAACAAG------------------------ 311
******************************* ****
consensus_940#0 GACGAGCAAGAGGTGCTGGTGGAGGCGGGGAGCAGCCAGCTGGATGGCGACATGGACTCG 480
consensus_940#1 ------------------------------------------------------------
consensus_940#0 GACCAGGCCGACTATGAGCCAGACGAGCGCCAGTACCGCTGCAGCTACTGCGGGAAGTGT 540
consensus_940#1 ------------------------------------------------------------
consensus_940#0 TACAGCCACGCCTCCAGCCTGTACCGCCACCAGCAGACGCACAGTGGTAAAAGCAGCGGA 600
consensus_940#1 ------------------------------------------------------------
consensus_940#0 CTG 603
consensus_940#1 ---
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |