These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_95#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [TTTTTTATATAAGGAATAGTTCACCTGATCCAGGGGATAGAAGCACTGAATAAGCAAGCTTTTAATAGTGATATTGCAATGGTGTCTTTGGCAATAATCCTCCATCTTCACTGAAAATTATTGCTGTGGATGACATTCTCATAAGTTTTGCTTGTCGCATTATACATCAAGATATTCAAAGTGAAATTAAATGAACATGGGTTTCACACTGTTTGAGTTCATGTTGGGCCTGGCTTAAGCTCAGTTGATCACACCTTCCCAGGGTCTTCTTTGAGGGTAACTGTTCTGTTAAAGACAAGCTTCTCTTCAGTGCTGTCGGGGTCCACAGAAAAATAACCGACCCTTTCAAACTGGAATTTGTCCAAAACCTTTGCTCCCTTGACTGAAGTATCCACCAGGGCATTGATGATTGTATTCAAAAAATTGGGGTTGATGTCGCTCAAAAA] [+] EMBL CA329262 [TTTTTTATATAAGGAATAGTTCACCTGATCCAGGGGATAGAAGCACTGAATAAGCAAGCTTTTAATAGTGATATTGCAATGGTGTCTTTGGCAATAATCCTCCATCTTCACTGAAAATTATTGCTGTGGATGACATTCTCATAAGTTTTGCTTGTCGCATTATACATCAAGATATTCAAAGTGAAATTAAATGAACATGGGTTTCACACTGTTTGAGTTCATGTTGGGCCTGGCTTAAGCTCAGTTGATCACACCTTCCCAGGGTCTTCTTTGAGGGTAACTGTTCTGTTAAAGACAAGCTTCTCTTCAGTGCTGTCGGGGTCCACAGAAAAATAACCGACCCTTTCAAACTGGAATTTGTCCAAAACCTTTGCTCCCTTGACTGAAGTATCCACCAGGGCATTGATGATTGTATTCAAAAAATTGGGGTTGATGTCGCTCAAAAA] consensusID : consensus_95#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [AGCTCTCTTAGGCTGTCGGGTCCACAGAAAAGTAGCCGCCCTTTCGAACTGGAATTTGTCCCAAACCTTTGCTCCCTTGACTGAAGTATCCACCAGGGCATTGCTGATTGTATTCAGAGAATTGGGGTTGATGTCGCTCAGGAAGCCATTGGGCCCCTCAGAAGGATCCTCTGGGTTTTTGTGTATGAATAGTCTTTCATAAAGGCGCACTTCACACGCCAGCGGCTGGCTGACCCAGTGGATGAAGGCCTTTGGTTTCTCTGCAGCCTCAGAGCTGCAGCAGCTCACCTGCAGTTCCACCACTTTTCCCTGAGCGTCCTTGATGACCTTCTGGACAGAGATGACATACCCCGCATGCCTCAGGCCTACAGGCTGTTCTGGGGTCAGGCGTTTGTAGCCCTTCTCCATCACCTCTTTGAAGTCACTCTGTTCAATGAAGCC] [-] EMBL FR0062124 [AGCTCTCTTAGGCTGTCGGGTCCACAGAAAAGTAGCCGCCCTTTCGAACTGGAATTTGTCCCAAACCTTTGCTCCCTTGACTGAAGTATCCACCAGGGCATTGCTGATTGTATTCAGAGAATTGGGGTTGATGTCGCTCAGGAAGCCATTGGGCCCCTCAGAAGGATCCTCTGGGTTTTTGTGTATGAATAGTCTTTCATAAAGGCGCACTTCACACGCCAGCGGCTGGCTGACCCAGTGGATGAAGGCCTTTGGTTTCTCTGCAGCCTCAGAGCTGCAGCAGCTCACCTGCAGTTCCACCACTTTTCCCTGAGCGTCCTTGATGACCTTCTGGACAGAGATGACATACCCCGCATGCCTCAGGCCTACAGGCTGTTCTGGGGTCAGGCGTTTGTAGCCCTTCTCCATCACCTCTTTGAAGTCACTCTGTTCAATGAAGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_95#0 TTTTTTATATAAGGAATAGTTCACCTGATCCAGGGGATAGAAGCACTGAATAAGCAAGCT 60 consensus_95#1 --------AGCTCTCTTAGGCTGTCGGGTCCACAGAAAAGTAGC--CGCCCTTTCGAACT 50 * *** * * **** * * ** *** * * * ** consensus_95#0 TTTAATAGTGATATTGCAATGGTGTCTTTGGCAATA-ATCCTCCATCTTCACTGAAAATT 119 consensus_95#1 GGAATTTGTCCCAAACCTTTGCTCCCTTGACTGAAGTATCCACCAGGG-CATTGCTGATT 109 * * ** * * ** * *** * **** *** ** ** *** consensus_95#0 ATTGCTGTGGA--TGACATTCTCATAAGTTTTGC--TTGTCGCATTATACATCAAGATAT 175 consensus_95#1 GTATTCAGAGAATTGGGGTTGATGTCGCTCAGGAAGCCATTGGGCCCCTCAGAAGGATCC 169 * ** ** ** * * * * * ** * *** consensus_95#0 TCAAAGTGAAATTAAATGAACATGGGTTTCACACTGTTTGAGTTCATGTT---GGGCCTG 232 consensus_95#1 TCTGGGTTTTTGTGTATGAATA-GTCTTTCATAAAGGCGCACTTCACACGCCAGCGGCTG 228 ** ** * ***** * * ***** * * * **** * * *** consensus_95#0 GCTTAAGCTCAGTTGATCACACCTTCCCAGGGTCTT----CTTTGAGG--GTAACTGTTC 286 consensus_95#1 GCTGA--CCCAGTGGATGAAGGCCTTTGGTTTCTCTGCAGCCTCAGAGCTGCAGCAGCTC 286 *** * * **** *** * * * * * * * * * * * ** consensus_95#0 TGTTAAAG----ACAAGCTTCTCTTCAGTGCTGTCGGGGTCCACAGAAAAATAACCGACC 342 consensus_95#1 ACCTGCAGTTCCACCACTTTTCCCTGAGCGTCCTTGATGACCTTCTGGACAGAGATGACA 346 * ** ** * ** * * ** * * * * ** * * * *** consensus_95#0 CTTTCAAACTGGAATTTGTCCAAAACCTTTGCTCCCTTGACTGAAGTATCCACCAGGGCA 402 consensus_95#1 TACCCCGCATGCCTCAGGCCTACAGGCT--GTTCTGGGGTCAGGCGTTTGTAGCCCTTC- 403 * ** * * * * ** * ** * * * ** * * * * consensus_95#0 TTGATGATTGTATTCAAAAAATTGGGGTTGATGTCGCTCAAAAA 446 consensus_95#1 TCCATCACCTCTTTGAAGTCACTCTGTTCAATGAAGCC------ 441 * ** * ** ** * * * * *** ** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |