cluster # 95

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Takifugu rubripes
cluster # 95 cluster # 95 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_95#0 length = 446 sequences # 1

consensus_95#1 length = 441 sequences # 1

consensusID : consensus_95#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence

                              [TTTTTTATATAAGGAATAGTTCACCTGATCCAGGGGATAGAAGCACTGAATAAGCAAGCTTTTAATAGTGATATTGCAATGGTGTCTTTGGCAATAATCCTCCATCTTCACTGAAAATTATTGCTGTGGATGACATTCTCATAAGTTTTGCTTGTCGCATTATACATCAAGATATTCAAAGTGAAATTAAATGAACATGGGTTTCACACTGTTTGAGTTCATGTTGGGCCTGGCTTAAGCTCAGTTGATCACACCTTCCCAGGGTCTTCTTTGAGGGTAACTGTTCTGTTAAAGACAAGCTTCTCTTCAGTGCTGTCGGGGTCCACAGAAAAATAACCGACCCTTTCAAACTGGAATTTGTCCAAAACCTTTGCTCCCTTGACTGAAGTATCCACCAGGGCATTGATGATTGTATTCAAAAAATTGGGGTTGATGTCGCTCAAAAA]

[+] EMBL CA329262             [TTTTTTATATAAGGAATAGTTCACCTGATCCAGGGGATAGAAGCACTGAATAAGCAAGCTTTTAATAGTGATATTGCAATGGTGTCTTTGGCAATAATCCTCCATCTTCACTGAAAATTATTGCTGTGGATGACATTCTCATAAGTTTTGCTTGTCGCATTATACATCAAGATATTCAAAGTGAAATTAAATGAACATGGGTTTCACACTGTTTGAGTTCATGTTGGGCCTGGCTTAAGCTCAGTTGATCACACCTTCCCAGGGTCTTCTTTGAGGGTAACTGTTCTGTTAAAGACAAGCTTCTCTTCAGTGCTGTCGGGGTCCACAGAAAAATAACCGACCCTTTCAAACTGGAATTTGTCCAAAACCTTTGCTCCCTTGACTGAAGTATCCACCAGGGCATTGATGATTGTATTCAAAAAATTGGGGTTGATGTCGCTCAAAAA]




>consensus_95#0
TTTTTTATATAAGGAATAGTTCACCTGATCCAGGGGATAGAAGCACTGAATAAGCAAGCT
TTTAATAGTGATATTGCAATGGTGTCTTTGGCAATAATCCTCCATCTTCACTGAAAATTA
TTGCTGTGGATGACATTCTCATAAGTTTTGCTTGTCGCATTATACATCAAGATATTCAAA
GTGAAATTAAATGAACATGGGTTTCACACTGTTTGAGTTCATGTTGGGCCTGGCTTAAGC
TCAGTTGATCACACCTTCCCAGGGTCTTCTTTGAGGGTAACTGTTCTGTTAAAGACAAGC
TTCTCTTCAGTGCTGTCGGGGTCCACAGAAAAATAACCGACCCTTTCAAACTGGAATTTG
TCCAAAACCTTTGCTCCCTTGACTGAAGTATCCACCAGGGCATTGATGATTGTATTCAAA
AAATTGGGGTTGATGTCGCTCAAAAA

consensusID : consensus_95#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [AGCTCTCTTAGGCTGTCGGGTCCACAGAAAAGTAGCCGCCCTTTCGAACTGGAATTTGTCCCAAACCTTTGCTCCCTTGACTGAAGTATCCACCAGGGCATTGCTGATTGTATTCAGAGAATTGGGGTTGATGTCGCTCAGGAAGCCATTGGGCCCCTCAGAAGGATCCTCTGGGTTTTTGTGTATGAATAGTCTTTCATAAAGGCGCACTTCACACGCCAGCGGCTGGCTGACCCAGTGGATGAAGGCCTTTGGTTTCTCTGCAGCCTCAGAGCTGCAGCAGCTCACCTGCAGTTCCACCACTTTTCCCTGAGCGTCCTTGATGACCTTCTGGACAGAGATGACATACCCCGCATGCCTCAGGCCTACAGGCTGTTCTGGGGTCAGGCGTTTGTAGCCCTTCTCCATCACCTCTTTGAAGTCACTCTGTTCAATGAAGCC]

[-] EMBL FR0062124            [AGCTCTCTTAGGCTGTCGGGTCCACAGAAAAGTAGCCGCCCTTTCGAACTGGAATTTGTCCCAAACCTTTGCTCCCTTGACTGAAGTATCCACCAGGGCATTGCTGATTGTATTCAGAGAATTGGGGTTGATGTCGCTCAGGAAGCCATTGGGCCCCTCAGAAGGATCCTCTGGGTTTTTGTGTATGAATAGTCTTTCATAAAGGCGCACTTCACACGCCAGCGGCTGGCTGACCCAGTGGATGAAGGCCTTTGGTTTCTCTGCAGCCTCAGAGCTGCAGCAGCTCACCTGCAGTTCCACCACTTTTCCCTGAGCGTCCTTGATGACCTTCTGGACAGAGATGACATACCCCGCATGCCTCAGGCCTACAGGCTGTTCTGGGGTCAGGCGTTTGTAGCCCTTCTCCATCACCTCTTTGAAGTCACTCTGTTCAATGAAGCC]




>consensus_95#1
AGCTCTCTTAGGCTGTCGGGTCCACAGAAAAGTAGCCGCCCTTTCGAACTGGAATTTGTC
CCAAACCTTTGCTCCCTTGACTGAAGTATCCACCAGGGCATTGCTGATTGTATTCAGAGA
ATTGGGGTTGATGTCGCTCAGGAAGCCATTGGGCCCCTCAGAAGGATCCTCTGGGTTTTT
GTGTATGAATAGTCTTTCATAAAGGCGCACTTCACACGCCAGCGGCTGGCTGACCCAGTG
GATGAAGGCCTTTGGTTTCTCTGCAGCCTCAGAGCTGCAGCAGCTCACCTGCAGTTCCAC
CACTTTTCCCTGAGCGTCCTTGATGACCTTCTGGACAGAGATGACATACCCCGCATGCCT
CAGGCCTACAGGCTGTTCTGGGGTCAGGCGTTTGTAGCCCTTCTCCATCACCTCTTTGAA
GTCACTCTGTTCAATGAAGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_95#0      TTTTTTATATAAGGAATAGTTCACCTGATCCAGGGGATAGAAGCACTGAATAAGCAAGCT 60
consensus_95#1      --------AGCTCTCTTAGGCTGTCGGGTCCACAGAAAAGTAGC--CGCCCTTTCGAACT 50
                            *       ***     * * ****  * * ** ***   *      * * **

consensus_95#0      TTTAATAGTGATATTGCAATGGTGTCTTTGGCAATA-ATCCTCCATCTTCACTGAAAATT 119
consensus_95#1      GGAATTTGTCCCAAACCTTTGCTCCCTTGACTGAAGTATCCACCAGGG-CATTGCTGATT 109
                       * * **   *   *  ** *  ***     *   **** ***    ** **   ***

consensus_95#0      ATTGCTGTGGA--TGACATTCTCATAAGTTTTGC--TTGTCGCATTATACATCAAGATAT 175
consensus_95#1      GTATTCAGAGAATTGGGGTTGATGTCGCTCAGGAAGCCATTGGGCCCCTCAGAAGGATCC 169
                     *       **  **   **    *   *   *      * *       **  * ***  

consensus_95#0      TCAAAGTGAAATTAAATGAACATGGGTTTCACACTGTTTGAGTTCATGTT---GGGCCTG 232
consensus_95#1      TCTGGGTTTTTGTGTATGAATA-GTCTTTCATAAAGGCGCACTTCACACGCCAGCGGCTG 228
                    **   **     *  ***** * *  ***** *  *    * ****       * * ***

consensus_95#0      GCTTAAGCTCAGTTGATCACACCTTCCCAGGGTCTT----CTTTGAGG--GTAACTGTTC 286
consensus_95#1      GCTGA--CCCAGTGGATGAAGGCCTTTGGTTTCTCTGCAGCCTCAGAGCTGCAGCAGCTC 286
                    *** *  * **** *** *   * *          *    * *    *  * * * * **

consensus_95#0      TGTTAAAG----ACAAGCTTCTCTTCAGTGCTGTCGGGGTCCACAGAAAAATAACCGACC 342
consensus_95#1      ACCTGCAGTTCCACCACTTTTCCCTGAGCGTCCTTGATGACCTTCTGGACAGAGATGACA 346
                       *  **    ** *  **  * * ** *   * *  * **      * * *   *** 

consensus_95#0      CTTTCAAACTGGAATTTGTCCAAAACCTTTGCTCCCTTGACTGAAGTATCCACCAGGGCA 402
consensus_95#1      TACCCCGCATGCCTCAGGCCTACAGGCT--GTTCTGGGGTCAGGCGTTTGTAGCCCTTC- 403
                        *    **      * * * *  **  * **    * * *  ** *  * *    * 

consensus_95#0      TTGATGATTGTATTCAAAAAATTGGGGTTGATGTCGCTCAAAAA 446
consensus_95#1      TCCATCACCTCTTTGAAGTCACTCTGTTCAATGAAGCC------ 441
                    *  ** *     ** **   * *  * *  ***  **

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)