cluster # 971

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Takifugu rubripes
cluster # 971 cluster # 971 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_971#0 length = 241 sequences # 1

consensus_971#1 length = 209 sequences # 1

consensusID : consensus_971#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 241
fasta sequence

                              [AAGTGGGCCAGGATCCAACCGGAGGGTCCGAGAATCGCCACAGTCAACACAGTCAGCACCAGCGCGGTTTGCACCGGACCAACGCGATCTTTAGGTGGTTTACCTTGGATGTAACCTGCTCTTTGTTCAATCATCACCCTTATTTTTGGAGCCAGACTTCGCCGAACTCTCCAAAATCCATTAAAAAGCCCACACATGTTGGTTAGTGCAGAACAAATTCTCAAACCTCTTTTGAAAAACG]

[+] EMBL CA844496             [AAGTGGGCCAGGATCCAACCGGAGGGTCCGAGAATCGCCACAGTCAACACAGTCAGCACCAGCGCGGTTTGCACCGGACCAACGCGATCTTTAGGTGGTTTACCTTGGATGTAACCTGCTCTTTGTTCAATCATCACCCTTATTTTTGGAGCCAGACTTCGCCGAACTCTCCAAAATCCATTAAAAAGCCCACACATGTTGGTTAGTGCAGAACAAATTCTCAAACCTCTTTTGAAAAACG]




>consensus_971#0
AAGTGGGCCAGGATCCAACCGGAGGGTCCGAGAATCGCCACAGTCAACACAGTCAGCACC
AGCGCGGTTTGCACCGGACCAACGCGATCTTTAGGTGGTTTACCTTGGATGTAACCTGCT
CTTTGTTCAATCATCACCCTTATTTTTGGAGCCAGACTTCGCCGAACTCTCCAAAATCCA
TTAAAAAGCCCACACATGTTGGTTAGTGCAGAACAAATTCTCAAACCTCTTTTGAAAAAC
G

consensusID : consensus_971#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 209
fasta sequence

                              [CTTGAAGTCTGGCTCCAAAAATAAGGGTGATGATTGAACAAAGAGCAGGTTACATCCAAGCAAACCGCGCTGGTGCTGACTGTGGCGATTCTCGGACCCTCCGGTTGGATCCTGGCCCACTTGGACCATTATAAAAGCCGTGGCTGATGCAGCTGAGACAGTTTGATCAAATGTTAAAATAAACCTTTTTCTAATAAACCTCAATTCCA]

[+] EMBL CA844518             [CTTGAAGTCTGGCTCCAAAAATAAGGGTGATGATTGAACAAAGAGCAGGTTACATCCAAGCAAACCGCGCTGGTGCTGACTGTGGCGATTCTCGGACCCTCCGGTTGGATCCTGGCCCACTTGGACCATTATAAAAGCCGTGGCTGATGCAGCTGAGACAGTTTGATCAAATGTTAAAATAAACCTTTTTCTAATAAACCTCAATTCCA]




>consensus_971#1
CTTGAAGTCTGGCTCCAAAAATAAGGGTGATGATTGAACAAAGAGCAGGTTACATCCAAG
CAAACCGCGCTGGTGCTGACTGTGGCGATTCTCGGACCCTCCGGTTGGATCCTGGCCCAC
TTGGACCATTATAAAAGCCGTGGCTGATGCAGCTGAGACAGTTTGATCAAATGTTAAAAT
AAACCTTTTTCTAATAAACCTCAATTCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_971#0      AAGTGGGCCAGGATCCAACCGGAGGGTCCGAGAATCGCCACAGT-CAACACAGTCAGCAC 59
consensus_971#1      CTTGAAGTCTGGCTCCAAAAATAAGGGTGATGATTGAACAAAGAGCAGGTTACATCCAAG 60
                           * * ** *****    * **     ** *   ** **  **    *      * 

consensus_971#0      CAGCGCGGTTTGCACCGGACCAACGCGATCTTTAGGTGGTTTACCTTGGATGTAACCTGC 119
consensus_971#1      CAAACCGCGCTGGTGCTGACTGTGGCGATTCTCGGACCCTCCGGTTGGATCCTGGCCCAC 120
                     **   **   **   * ***    *****  *  *    *     * *    *  **  *

consensus_971#0      TCTTTGTTCAATCATCACCCTTATTTTTGGAGCCAGACTTCGCCGAACTCTCCAAAATCC 179
consensus_971#1      T---TGGACCATTATAAAAGCCGTGGCTGATGC--AGCTGAGACAGTTTGATCAAA---T 172
                     *   **  * ** ** *      *   **  **    **  * *    *   ****    

consensus_971#0      ATTAAAAAGCCCACACATGTTGGTTAGTGCAGAACAAATTCTCAAACCTCTTTTGAAAAA 239
consensus_971#1      GTTAAAA----TAAACCT-TTTTCTAATAAACCTCAATTCCA------------------ 209
                      ******     * ** * **   ** *  *   *** * *                   

consensus_971#0      CG 241
consensus_971#1      --

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)