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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence
[AACCAGACGTTGCCAAAGAAGACTATGGCGTGGTGGGTAACAAATTCATGTTTTATTAGTAGTGCATTTGCAATGCGACGTTTGATACTATTTTGTTTCGTCTCAAAGCTTGTCAAGATGGAAAACCCGTACAAAGAACCCCAAAAAGGATGCCTCCTCTGTGACGTGACAGTGGACTACAAAAACATTCAGGTGAGCCTGGTACCTGTAGTTCTTCAGGAGTACCAGGTTTACTGTTCTATTTAGGATTCTAATTAATTAACACCATTATATCACGTGTTTTCTTCACAGAACCTCACCTTTATTCATTTTCAGATAGCATTTTGTCTTAAGCTGCTGTCTTCCACTCACCATCCTTACATGTAGTAACACACCTGTCTCCTCCCCAGCTCCTTTCCCAGTTTATCTCACCTCACACTGGACACATCTATGCCCGACATTTCACAGGTCTTTGTGGAGTAAAGCAAAAGCAGGTTGCCAAAGCAATAAAGAAAGCTCAATCAATGGGTGAGTTTTGTATTGAAGTAGTTCAATGCAAAATGTATACTGACTTTATGTCTTTTTTTAAATTTAGAATTT]
[+] EMBL CA844865 [AACCAGACGTTGCCAAAGAAGACTATGGCGTGGTGGGTAACAAATTCATGTTTTATTAGTAGTGCATTTGCAATGCGACGTTTGATACTATTTTGTTTCGTCTCAAAGCTTGTCAAGATGGAAAACCCGTACAAAGAACCCCAAAAAGGATGCCTCCTCTGTGACGTGACAGTGGACTACAAAAACATTCAGGTGAGCCTGGTACCTGTAGTTCTTCAGGAGTACCAGGTTTACTGTTCTATTTAGGATTCTAATTAATTAACACCATTATATCACGTGTTTTCTTCACAGAACCTCACCTTTATTCATTTTCAGATAGCATTTTGTCTTAAGCTGCTGTCTTCCACTCACCATCCTTACATGTAGTAACACACCTGTCTCCTCCCCAGCTCCTTTCCCAGTTTATCTCACCTCACACTGGACACATCTATGCCCGACATTTCACAGGTCTTTGTGGAGTAAAGCAAAAGCAGGTTGCCAAAGCAATAAAGAAAGCTCAATCAATGGGTGAGTTTTGTATTGAAGTAGTTCAATGCAAAATGTATACTGACTTTATGTCTTTTTTTAAATTTAGAATTT]
consensusID : consensus_988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 268 fasta sequence
[AACCCCATCCTTTTAAACTCCTCTGTAGCGTGACAGNGGACTACAAAAACATTCAGCTCCTTTCCCAGTTTATCTCACCTCACACTTTACACATCTATGCCCGACATTTCACAGGTCTTTGTGGAGTAAAGCAAAAGCAGGTTGCCAAAGCAATAAAGAAAGCTCAATCAATGGGTTTTATGTCAGTTACTCACAAGCATCCCCAGTTCATGAGAGACCCCAATATTTGTGCTGTCAAACAGCTGAATTAGTATTTTTCTTGTTCAAT]
[+] EMBL CA846487 [AACCCCATCCTTTTAAACTCCTCTGTAGCGTGACAGNGGACTACAAAAACATTCAGCTCCTTTCCCAGTTTATCTCACCTCACACTTTACACATCTATGCCCGACATTTCACAGGTCTTTGTGGAGTAAAGCAAAAGCAGGTTGCCAAAGCAATAAAGAAAGCTCAATCAATGGGTTTTATGTCAGTTACTCACAAGCATCCCCAGTTCATGAGAGACCCCAATATTTGTGCTGTCAAACAGCTGAATTAGTATTTTTCTTGTTCAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_988#0 AACCAGACGTTGCCAAAGAAGACTATGGCGTGGTGGGTAACAAATTCATGTTTTATTAGT 60
consensus_988#1 ------------------------------------------------------------
consensus_988#0 AGTGCATTTGCAATGCGACGTTTGATACTATTTTGTTTCGTCTCAAAGCTTGTCAAGATG 120
consensus_988#1 ------------------------------------------------------------
consensus_988#0 GAAAACCCGTACAAAGAACCCCAAAAAGGATGCCTCCTCTGTGACGTGACAGTGGACTAC 180
consensus_988#1 ------------------------------------------------------------
consensus_988#0 AAAAACATTCAGGTGAGCCTGGTACCTGTAGTTCTTCAGGAGTACCAGGTTTACTGTTCT 240
consensus_988#1 ------------------------------------------------------------
consensus_988#0 ATTTAGGATTCTAATTAATTAACACCATTATATCACGTGTTTTCTTCACAGAACCTCACC 300
consensus_988#1 ------------------------------------------------------------
consensus_988#0 TTTATTCATTTTCAGATAGCATTTTGTCTTAAGCTGCTGTCTTCCACTCACCATCCTTAC 360
consensus_988#1 -------------------------------AACCCCATCCTTTTAAACTCC-TCTGTA- 27
* * * *** * * ** ** **
consensus_988#0 ATGTAGTAACACACCTGTCTCCTCCCCAGCTCCTTTCCCAGTTTATCTCACCTCACACTG 420
consensus_988#1 GCGTGACAGNGGACTACAAAAACATTCAGCTCCTTTCCCAGTTTATCTCACCTCACACTT 87
** * ** *********************************
consensus_988#0 GACACATCTATGCCCGACATTTCACAGGTCTTTGTGGAGTAAAGCAAAAGCAGGTTGCCA 480
consensus_988#1 TACACATCTATGCCCGACATTTCACAGGTCTTTGTGGAGTAAAGCAAAAGCAGGTTGCCA 147
***********************************************************
consensus_988#0 AAGCAATAAAGAAAGCTCAATCAATGGGTGAGTTTTGTATTG-----AAGTAGTTC-AAT 534
consensus_988#1 AAGCAATAAAGAAAGCTCAATCAATGGGTTTTATGTCAGTTACTCACAAGCATCCCCAGT 207
***************************** * * ** *** * * * *
consensus_988#0 GCAAAATGTATACTGAC-TTTATGTCTTTTTTTAAAT---TTAGAATTT----------- 579
consensus_988#1 TCATGAGAGACCCCAATATTTGTGCTGTCAAACAGCTGAATTAGTATTTTTCTTGTTCAA 267
** * * * * *** ** * * * **** ****
consensus_988#0 -
consensus_988#1 T 268
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |