This document is licensed under a Creative Commons License.
This example was prepared with a newer ADaCGH and contains clickable points in the figures with links to IDCLight. (You are not allowed to play around and modify the FDR. If you want to try that, please download the sample data file, and launch a run.).
This example was prepared with the ADaCGH as of 2006-10-06, that incorporates finding minimal common regions. This example also illustrates that the results of the minimal common regions analysis and the mergeLevels algorithm are not always compatible. Please note that this example was created with a former version of the code!
Scroll to the bottom of the results to see a fictitious example where we can send results to PaLS to examine the sets of genes with gains, losses, or alterations (gains or losses) for GO terms, KEGG and Reactome pathways, and PubMed references.
This example was prepared with the ADaCGH as of 2007-08-23.
A small example is provided here (and here as zipped file). This is for the "One file" input option. If you use it, you can specify that the identifiers are Unigene and are from human. The example used for showing the Minimal common regions functionality is here. More examples, some of them of unlikely and contorted, can be found in the corresponding directory for the Functional Testing subproject of Asterias (see either the Bioinformatics.org page or the The Launchpad).
The text of this document and the comments added to the output are copyright © 2005, 2006 Ramón Díaz-Uriarte. You can, however, do quite a bit of things with all the text, since this document is licensed under a Creative Commons license, as shown below (click on the links to read the terms of the license).