Revision
214 -
Directory Listing
Modified
Wed Mar 14 01:47:41 2012 UTC
(12 years, 5 months ago)
by
gpertea
fixed ugly bug in GBamRecord::find_tag()
Revision
198 -
Directory Listing
Modified
Sun Feb 26 18:03:46 2012 UTC
(12 years, 6 months ago)
by
gpertea
Revision
197 -
Directory Listing
Modified
Sun Feb 26 18:02:05 2012 UTC
(12 years, 6 months ago)
by
gpertea
trans.gff3 seems to work
Revision
196 -
Directory Listing
Modified
Fri Feb 24 22:48:54 2012 UTC
(12 years, 6 months ago)
by
gpertea
wip gffread trans-splice
Revision
195 -
Directory Listing
Modified
Thu Feb 23 22:37:36 2012 UTC
(12 years, 6 months ago)
by
gpertea
gff wip
Revision
194 -
Directory Listing
Modified
Tue Feb 21 21:19:11 2012 UTC
(12 years, 6 months ago)
by
gpertea
increased "safe length" for an alignment from 16 to 22
Revision
193 -
Directory Listing
Modified
Fri Feb 17 23:44:04 2012 UTC
(12 years, 6 months ago)
by
gpertea
Revision
191 -
Directory Listing
Modified
Fri Feb 17 23:33:25 2012 UTC
(12 years, 6 months ago)
by
gpertea
Revision
188 -
Directory Listing
Modified
Fri Feb 17 05:42:37 2012 UTC
(12 years, 6 months ago)
by
gpertea
fqtrim works
Revision
186 -
Directory Listing
Modified
Thu Feb 16 22:15:58 2012 UTC
(12 years, 6 months ago)
by
gpertea
adjust safelen threshold from 12 to 16
Revision
184 -
Directory Listing
Modified
Thu Feb 16 21:59:44 2012 UTC
(12 years, 6 months ago)
by
gpertea
works
Revision
181 -
Directory Listing
Modified
Thu Feb 16 21:24:29 2012 UTC
(12 years, 6 months ago)
by
gpertea
fqtrim works
Revision
179 -
Directory Listing
Modified
Thu Feb 16 16:23:45 2012 UTC
(12 years, 6 months ago)
by
gpertea
moved bit handling inlines from GBase to GBitVec
Revision
178 -
Directory Listing
Modified
Thu Feb 16 07:10:45 2012 UTC
(12 years, 6 months ago)
by
gpertea
fqtrim
Revision
176 -
Directory Listing
Modified
Thu Feb 16 03:47:16 2012 UTC
(12 years, 6 months ago)
by
gpertea
fqtrim reworked
Revision
174 -
Directory Listing
Modified
Wed Feb 15 21:04:38 2012 UTC
(12 years, 6 months ago)
by
gpertea
wip fqtrim
Revision
173 -
Directory Listing
Modified
Wed Feb 15 03:34:29 2012 UTC
(12 years, 6 months ago)
by
gpertea
wip fqtrim
Revision
171 -
Directory Listing
Modified
Tue Feb 14 22:36:26 2012 UTC
(12 years, 6 months ago)
by
gpertea
wip fqtrim
Revision
156 -
Directory Listing
Modified
Fri Jan 27 18:29:55 2012 UTC
(12 years, 7 months ago)
by
gpertea
adding refactored TinyThread++ code
Revision
153 -
Directory Listing
Modified
Fri Jan 20 22:35:32 2012 UTC
(12 years, 7 months ago)
by
gpertea
still working on trans-splicing/fusions in gff
Revision
152 -
Directory Listing
Modified
Fri Jan 13 23:08:23 2012 UTC
(12 years, 7 months ago)
by
gpertea
wip
Revision
151 -
Directory Listing
Modified
Fri Jan 13 22:56:48 2012 UTC
(12 years, 7 months ago)
by
gpertea
wip: trans-spliced and fusion transcripts
Revision
150 -
Directory Listing
Modified
Fri Jan 13 17:20:39 2012 UTC
(12 years, 7 months ago)
by
gpertea
fixed parsing bug for extractAttr();
Gstrcmp() and Gstricmp() take a 3rd optional param to make them work like strncmp()
Revision
144 -
Directory Listing
Modified
Thu Dec 22 19:15:46 2011 UTC
(12 years, 8 months ago)
by
gpertea
added GBitVec.h; removed operator> requirement for sorted vectors; swap() is now template Gswap()
Revision
133 -
Directory Listing
Modified
Fri Dec 9 15:59:14 2011 UTC
(12 years, 8 months ago)
by
gpertea
TODO: detect sam/bam input for samopen
Revision
132 -
Directory Listing
Modified
Thu Dec 8 02:53:32 2011 UTC
(12 years, 8 months ago)
by
gpertea
GBam working; fixed serious memory leak in GVec::setCapacity()
Revision
130 -
Directory Listing
Modified
Thu Dec 8 01:18:08 2011 UTC
(12 years, 8 months ago)
by
gpertea
fixed exon positions
Revision
129 -
Directory Listing
Modified
Wed Dec 7 20:59:43 2011 UTC
(12 years, 8 months ago)
by
gpertea
Revision
127 -
Directory Listing
Modified
Wed Dec 7 18:31:56 2011 UTC
(12 years, 8 months ago)
by
gpertea
Revision
126 -
Directory Listing
Modified
Tue Dec 6 22:45:06 2011 UTC
(12 years, 8 months ago)
by
gpertea
wip
Revision
124 -
Directory Listing
Modified
Tue Dec 6 04:54:35 2011 UTC
(12 years, 8 months ago)
by
gpertea
GBam wip
Revision
121 -
Directory Listing
Modified
Mon Dec 5 22:18:48 2011 UTC
(12 years, 9 months ago)
by
gpertea
added GBam BAM reader/writer classes (wip)
Revision
115 -
Directory Listing
Modified
Mon Nov 7 21:25:03 2011 UTC
(12 years, 9 months ago)
by
gpertea
fixed horrendous bug in GList.hh (resizing GVec)
Revision
109 -
Directory Listing
Modified
Tue Oct 11 19:50:14 2011 UTC
(12 years, 10 months ago)
by
gpertea
added GStr::reverse(), GAlnExtend stringency tweaks
Revision
107 -
Directory Listing
Modified
Tue Oct 11 12:31:50 2011 UTC
(12 years, 10 months ago)
by
gpertea
wip GYarn (threads)
Revision
106 -
Directory Listing
Modified
Mon Oct 10 21:45:05 2011 UTC
(12 years, 10 months ago)
by
gpertea
Revision
104 -
Directory Listing
Modified
Mon Oct 10 19:34:20 2011 UTC
(12 years, 10 months ago)
by
gpertea
fixed GVec, GArray to use new[] instead of malloc
Revision
101 -
Directory Listing
Modified
Fri Oct 7 21:13:55 2011 UTC
(12 years, 10 months ago)
by
gpertea
adjusting params
Revision
99 -
Directory Listing
Modified
Thu Oct 6 20:49:17 2011 UTC
(12 years, 10 months ago)
by
gpertea
wip
Revision
96 -
Directory Listing
Modified
Wed Oct 5 18:31:48 2011 UTC
(12 years, 11 months ago)
by
gpertea
moved match_LeftEnd() and match_RightEnd() to GAlnExtend
Revision
93 -
Directory Listing
Modified
Tue Oct 4 12:27:31 2011 UTC
(12 years, 11 months ago)
by
gpertea
added gapped alignment extension code
Revision
90 -
Directory Listing
Modified
Mon Oct 3 18:45:22 2011 UTC
(12 years, 11 months ago)
by
gpertea
reverseChars() minor edit
Revision
66 -
Directory Listing
Modified
Fri Sep 16 18:33:54 2011 UTC
(12 years, 11 months ago)
by
gpertea
made some Flybase GFF3 "errors" non-fatal
Revision
63 -
Directory Listing
Modified
Fri Sep 9 20:19:21 2011 UTC
(12 years, 11 months ago)
by
gpertea
Revision
60 -
Directory Listing
Modified
Fri Sep 9 18:00:55 2011 UTC
(12 years, 11 months ago)
by
gpertea
made sure Swap (Exchange) is available for GList, GVec
Revision
55 -
Directory Listing
Modified
Thu Sep 8 05:46:53 2011 UTC
(12 years, 11 months ago)
by
gpertea
RPS20P29, ENSG00000241828 not collapsing
Revision
51 -
Directory Listing
Modified
Thu Sep 8 01:02:11 2011 UTC
(12 years, 11 months ago)
by
gpertea
fix direct CDS segment given as the only subfeature
Revision
50 -
Directory Listing
Modified
Thu Sep 8 00:47:22 2011 UTC
(12 years, 11 months ago)
by
gpertea
fixed a loading bug when a CDS was given to a monoFeature() with a self-exon
Revision
41 -
Directory Listing
Modified
Sat Aug 27 16:58:00 2011 UTC
(13 years ago)
by
gpertea
added fix for fileExists() under MSVC
Revision
36 -
Directory Listing
Modified
Mon Aug 22 15:56:21 2011 UTC
(13 years ago)
by
gpertea
Revision
18 -
Directory Listing
Modified
Mon Jul 18 21:00:21 2011 UTC
(13 years, 1 month ago)
by
gpertea
added a few more source files, test code
Revision
16 -
Directory Listing
Modified
Mon Jul 18 20:56:02 2011 UTC
(13 years, 1 month ago)
by
gpertea
sync with local source
Revision
2 -
Directory Listing
Modified
Mon Mar 22 22:03:27 2010 UTC
(14 years, 5 months ago)
by
gpertea
added my gclib source files
Revision
1 -
Directory Listing
Added
Mon Mar 22 22:01:50 2010 UTC
(14 years, 5 months ago)
by
gpertea
import