| Revision: | 23 |
| Committed: | Tue Jul 26 21:44:38 2011 UTC (13 years, 1 month ago) by gpertea |
| Original Path: | ann_bin/gmap2seq | File size: | 340 byte(s) |
| Log Message: | adding misc scripts |
| Line | File contents |
|---|---|
| 1 | #!/bin/tcsh -f |
| 2 | |
| 3 | set prog = 'gmap' |
| 4 | if ( $0 =~ *pmap2seq ) then |
| 5 | set prog = 'pmap' |
| 6 | endif |
| 7 | |
| 8 | if ($2'x' == 'x') then |
| 9 | echo "Usage: \n $0 qryseq(s).fasta genomicseq.fasta" |
| 10 | exit 1 |
| 11 | endif |
| 12 | |
| 13 | set fqry=$1 |
| 14 | shift |
| 15 | set fgenomic=$1 |
| 16 | shift |
| 17 | if (-f $fqry && -f $fgenomic) then |
| 18 | $prog -g $fgenomic -f2 $* $fqry |
| 19 | else |
| 20 | echo "$fqry or $fgenomic not found!" |
| 21 | endif |
| Name | Value |
|---|---|
| svn:executable | * |