Revision: | 23 |
Committed: | Tue Jul 26 21:44:38 2011 UTC (13 years, 1 month ago) by gpertea |
Original Path: | ann_bin/gmap2seq | File size: | 340 byte(s) |
Log Message: | adding misc scripts |
Line | File contents |
---|---|
1 | #!/bin/tcsh -f |
2 | |
3 | set prog = 'gmap' |
4 | if ( $0 =~ *pmap2seq ) then |
5 | set prog = 'pmap' |
6 | endif |
7 | |
8 | if ($2'x' == 'x') then |
9 | echo "Usage: \n $0 qryseq(s).fasta genomicseq.fasta" |
10 | exit 1 |
11 | endif |
12 | |
13 | set fqry=$1 |
14 | shift |
15 | set fgenomic=$1 |
16 | shift |
17 | if (-f $fqry && -f $fgenomic) then |
18 | $prog -g $fgenomic -f2 $* $fqry |
19 | else |
20 | echo "$fqry or $fgenomic not found!" |
21 | endif |
Name | Value |
---|---|
svn:executable | * |