Revision 92 - Directory Listing
Modified Mon Oct 3 21:36:42 2011 UTC (13 years, 4 months ago) by gpertea

switching to gclib/GAlnExtend

Revision 89 - Directory Listing
Modified Mon Oct 3 18:42:24 2011 UTC (13 years, 4 months ago) by gpertea

separate wrappers for 5' and  3' alignments

Revision 87 - Directory Listing
Modified Sun Oct 2 19:12:03 2011 UTC (13 years, 4 months ago) by gpertea

disable pointer arithmetic in GXGreedyExtend(), it's bad

Revision 86 - Directory Listing
Modified Fri Sep 30 21:38:39 2011 UTC (13 years, 4 months ago) by gpertea

fixed a few more subtle bugs

Revision 85 - Directory Listing
Modified Fri Sep 30 20:38:13 2011 UTC (13 years, 4 months ago) by gpertea

rewrote, set params X=8, M=2, N=3

Revision 84 - Directory Listing
Modified Fri Sep 30 03:19:32 2011 UTC (13 years, 4 months ago) by gpertea

wip bad

Revision 83 - Directory Listing
Modified Thu Sep 29 21:32:42 2011 UTC (13 years, 4 months ago) by gpertea

wip

Revision 82 - Directory Listing
Modified Thu Sep 29 20:46:39 2011 UTC (13 years, 4 months ago) by gpertea

wip

Revision 81 - Directory Listing
Modified Thu Sep 29 19:02:24 2011 UTC (13 years, 4 months ago) by gpertea

fixes, still a bug with flast_d[d] = flast_d[d] - flower + 2;

Revision 80 - Directory Listing
Modified Wed Sep 28 21:12:17 2011 UTC (13 years, 4 months ago) by gpertea

wip

Revision 79 - Directory Listing
Modified Wed Sep 28 19:54:42 2011 UTC (13 years, 4 months ago) by gpertea

wip, fixed memory leaks

Revision 78 - Directory Listing
Modified Wed Sep 28 03:20:10 2011 UTC (13 years, 4 months ago) by gpertea

3' match seems to work, needs a few refinements

Revision 77 - Directory Listing
Modified Tue Sep 27 21:07:59 2011 UTC (13 years, 4 months ago) by gpertea

wip - cutting seeds, finalize()

Revision 75 - Directory Listing
Modified Tue Sep 27 02:24:57 2011 UTC (13 years, 4 months ago) by gpertea

implementing GreedyAlign for best rseeds etc.

Revision 74 - Directory Listing
Modified Tue Sep 27 01:22:37 2011 UTC (13 years, 4 months ago) by gpertea

added seqalign files

Revision 73 - Directory Listing
Added Tue Sep 27 01:20:53 2011 UTC (13 years, 4 months ago) by gpertea

creating seqalign storage