Revision 263 - (view) (annotate) - [select for diffs]
Modified Mon Jul 30 21:38:58 2012 UTC (12 years, 1 month ago) by gpertea
File length: 3685 byte(s)
Diff to previous 260 , to selected 228

resuming works

Revision 260 - (view) (annotate) - [select for diffs]
Modified Tue Jul 24 20:10:50 2012 UTC (12 years, 1 month ago) by gpertea
File length: 3662 byte(s)
Diff to previous 259 , to selected 228

wip tophat.py - adding resume feature

Revision 259 - (view) (annotate) - [select for diffs]
Modified Fri Jun 29 19:01:59 2012 UTC (12 years, 2 months ago) by gpertea
File length: 3670 byte(s)
Diff to previous 257 , to selected 228

updated to v2.0.4

Revision 257 - (view) (annotate) - [select for diffs]
Modified Mon Jun 18 21:08:57 2012 UTC (12 years, 2 months ago) by gpertea
File length: 3670 byte(s)
Diff to previous 256 , to selected 228

update

Revision 256 - (view) (annotate) - [select for diffs]
Modified Mon Jun 11 19:35:44 2012 UTC (12 years, 2 months ago) by gpertea
File length: 3669 byte(s)
Diff to previous 254 , to selected 228

sync with Daehwan's fixes

Revision 254 - (view) (annotate) - [select for diffs]
Modified Wed May 30 22:29:09 2012 UTC (12 years, 3 months ago) by gpertea
File length: 3670 byte(s)
Diff to previous 236 , to selected 228

fix_map_ordering wip to throw away not "acceptable" mappings

Revision 236 - (view) (annotate) - [select for diffs]
Modified Fri May 4 22:20:02 2012 UTC (12 years, 4 months ago) by gpertea
File length: 3670 byte(s)
Diff to previous 233 , to selected 228

sync, wip prep_reads

Revision 233 - (view) (annotate) - [select for diffs]
Modified Wed Apr 11 21:05:01 2012 UTC (12 years, 4 months ago) by gpertea
File length: 3691 byte(s)
Diff to previous 228

Revision 228 - (view) (annotate) - [selected]
Modified Wed Mar 28 05:13:28 2012 UTC (12 years, 5 months ago) by gpertea
File length: 3676 byte(s)
Diff to previous 221

wip - prefiltering fix

Revision 221 - (view) (annotate) - [select for diffs]
Modified Fri Mar 23 03:15:08 2012 UTC (12 years, 5 months ago) by gpertea
File length: 3674 byte(s)
Diff to previous 220 , to selected 228

Revision 220 - (view) (annotate) - [select for diffs]
Modified Thu Mar 22 19:33:00 2012 UTC (12 years, 5 months ago) by gpertea
File length: 3669 byte(s)
Diff to previous 219 , to selected 228

working, writing rejected.bam

Revision 219 - (view) (annotate) - [select for diffs]
Modified Wed Mar 21 21:06:37 2012 UTC (12 years, 5 months ago) by gpertea
File length: 3670 byte(s)
Diff to previous 217 , to selected 228

almost working with bam all over

Revision 217 - (view) (annotate) - [select for diffs]
Modified Wed Mar 14 19:58:18 2012 UTC (12 years, 5 months ago) by gpertea
File length: 3655 byte(s)
Diff to previous 215 , to selected 228

Revision 215 - (view) (annotate) - [select for diffs]
Modified Wed Mar 14 02:06:47 2012 UTC (12 years, 5 months ago) by gpertea
File length: 3664 byte(s)
Diff to previous 211 , to selected 228

bam read support complete, now to make prep_reads conversion..

Revision 211 - (view) (annotate) - [select for diffs]
Modified Tue Mar 13 21:02:03 2012 UTC (12 years, 5 months ago) by gpertea
File length: 3658 byte(s)
Diff to previous 207 , to selected 228

wip -- still errors in logs!

Revision 207 - (view) (annotate) - [select for diffs]
Modified Mon Mar 12 21:39:30 2012 UTC (12 years, 5 months ago) by gpertea
File length: 3652 byte(s)
Diff to previous 200 , to selected 228

wip 

Revision 200 - (view) (annotate) - [select for diffs]
Modified Fri Mar 9 22:25:25 2012 UTC (12 years, 5 months ago) by gpertea
File length: 3651 byte(s)
Diff to previous 167 , to selected 228

Revision 167 - (view) (annotate) - [select for diffs]
Modified Fri Feb 10 05:51:56 2012 UTC (12 years, 6 months ago) by gpertea
File length: 3578 byte(s)
Diff to previous 163 , to selected 228

bam_merge needs fixing!

Revision 163 - (view) (annotate) - [select for diffs]
Modified Thu Feb 9 03:31:49 2012 UTC (12 years, 6 months ago) by gpertea
File length: 3437 byte(s)
Diff to previous 157 , to selected 228

wip

Revision 157 - (view) (annotate) - [select for diffs]
Modified Fri Jan 27 22:33:06 2012 UTC (12 years, 7 months ago) by gpertea
File length: 3427 byte(s)
Diff to previous 154 , to selected 228

added index writing to GBamWriter

Revision 154 - (view) (annotate) - [select for diffs]
Modified Tue Jan 24 02:29:21 2012 UTC (12 years, 7 months ago) by gpertea
File length: 3460 byte(s)
Diff to previous 135 , to selected 228

massive update with Daehwan's work

Revision 135 - (view) (annotate) - [select for diffs]
Modified Mon Dec 12 22:28:38 2011 UTC (12 years, 8 months ago) by gpertea
File length: 3393 byte(s)
Diff to previous 67 , to selected 228

wip - SplicedSAMHitFactory() still not implemented

Revision 67 - (view) (annotate) - [select for diffs]
Modified Mon Sep 19 19:39:49 2011 UTC (12 years, 11 months ago) by gpertea
File length: 2998 byte(s)
Diff to previous 33 , to selected 228

fixed segment_juncs to work with .bam files

Revision 33 - (view) (annotate) - [select for diffs]
Modified Wed Aug 3 17:02:56 2011 UTC (13 years, 1 month ago) by gpertea
File length: 3010 byte(s)
Diff to previous 29 , to selected 228

wip conversion to SAM processing

Revision 29 - (view) (annotate) - [select for diffs]
Added Tue Aug 2 21:24:54 2011 UTC (13 years, 1 month ago) by gpertea
File length: 2996 byte(s)
Diff to selected 228

adding tophat source work