Revision 206 - (view) (annotate) - [select for diffs]
Modified Mon Mar 12 18:02:35 2012 UTC (12 years, 6 months ago) by gpertea
File length: 86102 byte(s)
Diff to previous 200 , to selected 154

updated

Revision 200 - (view) (annotate) - [select for diffs]
Modified Fri Mar 9 22:25:25 2012 UTC (12 years, 7 months ago) by gpertea
File length: 85913 byte(s)
Diff to previous 169 , to selected 154

Revision 169 - (view) (annotate) - [select for diffs]
Modified Fri Feb 10 18:56:56 2012 UTC (12 years, 7 months ago) by gpertea
File length: 85516 byte(s)
Diff to previous 165 , to selected 154

sync

Revision 165 - (view) (annotate) - [select for diffs]
Modified Fri Feb 10 01:04:05 2012 UTC (12 years, 7 months ago) by gpertea
File length: 85215 byte(s)
Diff to previous 159 , to selected 154

sync back with Daehwan. Test bam_merge for memory leaks!

Revision 159 - (view) (annotate) - [select for diffs]
Modified Mon Jan 30 22:38:08 2012 UTC (12 years, 8 months ago) by gpertea
File length: 82253 byte(s)
Diff to previous 154

wip

Revision 154 - (view) (annotate) - [selected]
Modified Tue Jan 24 02:29:21 2012 UTC (12 years, 8 months ago) by gpertea
File length: 80629 byte(s)
Diff to previous 140

massive update with Daehwan's work

Revision 140 - (view) (annotate) - [select for diffs]
Modified Thu Dec 15 22:40:48 2011 UTC (12 years, 9 months ago) by gpertea
File length: 56917 byte(s)
Diff to previous 139 , to selected 154

Revision 139 - (view) (annotate) - [select for diffs]
Modified Thu Dec 15 22:36:13 2011 UTC (12 years, 9 months ago) by gpertea
File length: 57033 byte(s)
Diff to previous 138 , to selected 154

spliceCigar() implemented, needs testing

Revision 138 - (view) (annotate) - [select for diffs]
Modified Wed Dec 14 22:58:39 2011 UTC (12 years, 9 months ago) by gpertea
File length: 56204 byte(s)
Diff to previous 137 , to selected 154

Revision 137 - (view) (annotate) - [select for diffs]
Modified Wed Dec 14 22:58:22 2011 UTC (12 years, 9 months ago) by gpertea
File length: 56203 byte(s)
Diff to previous 135 , to selected 154

wip spliceCigar() in bwt_map.cpp needs testing

Revision 135 - (view) (annotate) - [select for diffs]
Modified Mon Dec 12 22:28:38 2011 UTC (12 years, 9 months ago) by gpertea
File length: 52959 byte(s)
Diff to previous 97 , to selected 154

wip - SplicedSAMHitFactory() still not implemented

Revision 97 - (view) (annotate) - [select for diffs]
Modified Thu Oct 6 19:45:36 2011 UTC (13 years ago) by gpertea
File length: 52897 byte(s)
Diff to previous 70 , to selected 154

by default bam2fastx shows unmapped only

Revision 70 - (view) (annotate) - [select for diffs]
Modified Tue Sep 20 19:32:58 2011 UTC (13 years ago) by gpertea
File length: 52769 byte(s)
Diff to previous 69 , to selected 154

wip : spliceCigar()

Revision 69 - (view) (annotate) - [select for diffs]
Modified Mon Sep 19 21:00:41 2011 UTC (13 years ago) by gpertea
File length: 52149 byte(s)
Diff to previous 29 , to selected 154

wip - implementing SplicedSAMHitFactory::get_hit_from_buf()

Revision 29 - (view) (annotate) - [select for diffs]
Added Tue Aug 2 21:24:54 2011 UTC (13 years, 2 months ago) by gpertea
File length: 41661 byte(s)
Diff to selected 154

adding tophat source work