Revision 231 - (view) (annotate) - [select for diffs]
Modified Tue Apr 3 21:41:40 2012 UTC (12 years, 5 months ago) by gpertea
File length: 13881 byte(s)
Diff to previous 229 , to selected 135

resync

Revision 229 - (view) (annotate) - [select for diffs]
Modified Wed Mar 28 05:19:02 2012 UTC (12 years, 5 months ago) by gpertea
File length: 13696 byte(s)
Diff to previous 228 , to selected 135

prefiltering seems to work

Revision 228 - (view) (annotate) - [select for diffs]
Modified Wed Mar 28 05:13:28 2012 UTC (12 years, 5 months ago) by gpertea
File length: 13758 byte(s)
Diff to previous 223 , to selected 135

wip - prefiltering fix

Revision 223 - (view) (annotate) - [select for diffs]
Modified Fri Mar 23 22:39:52 2012 UTC (12 years, 5 months ago) by gpertea
File length: 12606 byte(s)
Diff to previous 221 , to selected 135

Revision 221 - (view) (annotate) - [select for diffs]
Modified Fri Mar 23 03:15:08 2012 UTC (12 years, 5 months ago) by gpertea
File length: 12610 byte(s)
Diff to previous 220 , to selected 135

Revision 220 - (view) (annotate) - [select for diffs]
Modified Thu Mar 22 19:33:00 2012 UTC (12 years, 5 months ago) by gpertea
File length: 12605 byte(s)
Diff to previous 219 , to selected 135

working, writing rejected.bam

Revision 219 - (view) (annotate) - [select for diffs]
Modified Wed Mar 21 21:06:37 2012 UTC (12 years, 5 months ago) by gpertea
File length: 12314 byte(s)
Diff to previous 218 , to selected 135

almost working with bam all over

Revision 218 - (view) (annotate) - [select for diffs]
Modified Tue Mar 20 21:31:57 2012 UTC (12 years, 5 months ago) by gpertea
File length: 12271 byte(s)
Diff to previous 217 , to selected 135

prep_reads now writes bam

Revision 217 - (view) (annotate) - [select for diffs]
Modified Wed Mar 14 19:58:18 2012 UTC (12 years, 5 months ago) by gpertea
File length: 11420 byte(s)
Diff to previous 211 , to selected 135

Revision 211 - (view) (annotate) - [select for diffs]
Modified Tue Mar 13 21:02:03 2012 UTC (12 years, 5 months ago) by gpertea
File length: 10867 byte(s)
Diff to previous 210 , to selected 135

wip -- still errors in logs!

Revision 210 - (view) (annotate) - [select for diffs]
Modified Tue Mar 13 01:26:20 2012 UTC (12 years, 5 months ago) by gpertea
File length: 11030 byte(s)
Diff to previous 207 , to selected 135

wip: prep_reads from/to BAM

Revision 207 - (view) (annotate) - [select for diffs]
Modified Mon Mar 12 21:39:30 2012 UTC (12 years, 5 months ago) by gpertea
File length: 11045 byte(s)
Diff to previous 206 , to selected 135

wip 

Revision 206 - (view) (annotate) - [select for diffs]
Modified Mon Mar 12 18:02:35 2012 UTC (12 years, 5 months ago) by gpertea
File length: 10965 byte(s)
Diff to previous 154 , to selected 135

updated

Revision 154 - (view) (annotate) - [select for diffs]
Modified Tue Jan 24 02:29:21 2012 UTC (12 years, 7 months ago) by gpertea
File length: 10957 byte(s)
Diff to previous 135

massive update with Daehwan's work

Revision 135 - (view) (annotate) - [selected]
Modified Mon Dec 12 22:28:38 2011 UTC (12 years, 8 months ago) by gpertea
File length: 10015 byte(s)
Diff to previous 68

wip - SplicedSAMHitFactory() still not implemented

Revision 68 - (view) (annotate) - [select for diffs]
Modified Mon Sep 19 20:09:26 2011 UTC (12 years, 11 months ago) by gpertea
File length: 6934 byte(s)
Diff to previous 29 , to selected 135

first attempt at accepting different Color qvlen in prep_reads

Revision 29 - (view) (annotate) - [select for diffs]
Added Tue Aug 2 21:24:54 2011 UTC (13 years, 1 month ago) by gpertea
File length: 6958 byte(s)
Diff to selected 135

adding tophat source work