Revision 220 - (view) (annotate) - [select for diffs]
Modified Thu Mar 22 19:33:00 2012 UTC (12 years, 5 months ago) by gpertea
File length: 18405 byte(s)
Diff to previous 219

working, writing rejected.bam

Revision 219 - (view) (annotate) - [select for diffs]
Modified Wed Mar 21 21:06:37 2012 UTC (12 years, 5 months ago) by gpertea
File length: 18587 byte(s)
Diff to previous 217

almost working with bam all over

Revision 217 - (view) (annotate) - [select for diffs]
Modified Wed Mar 14 19:58:18 2012 UTC (12 years, 5 months ago) by gpertea
File length: 17764 byte(s)
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Revision 215 - (view) (annotate) - [select for diffs]
Modified Wed Mar 14 02:06:47 2012 UTC (12 years, 5 months ago) by gpertea
File length: 17761 byte(s)
Diff to previous 211

bam read support complete, now to make prep_reads conversion..

Revision 211 - (view) (annotate) - [select for diffs]
Modified Tue Mar 13 21:02:03 2012 UTC (12 years, 5 months ago) by gpertea
File length: 17692 byte(s)
Diff to previous 210

wip -- still errors in logs!

Revision 210 - (view) (annotate) - [select for diffs]
Modified Tue Mar 13 01:26:20 2012 UTC (12 years, 5 months ago) by gpertea
File length: 17652 byte(s)
Diff to previous 207

wip: prep_reads from/to BAM

Revision 207 - (view) (annotate) - [select for diffs]
Modified Mon Mar 12 21:39:30 2012 UTC (12 years, 5 months ago) by gpertea
File length: 17442 byte(s)
Diff to previous 200

wip 

Revision 200 - (view) (annotate) - [select for diffs]
Modified Fri Mar 9 22:25:25 2012 UTC (12 years, 5 months ago) by gpertea
File length: 18043 byte(s)
Diff to previous 163

Revision 163 - (view) (annotate) - [select for diffs]
Modified Thu Feb 9 03:31:49 2012 UTC (12 years, 6 months ago) by gpertea
File length: 18027 byte(s)
Diff to previous 159

wip

Revision 159 - (view) (annotate) - [select for diffs]
Modified Mon Jan 30 22:38:08 2012 UTC (12 years, 7 months ago) by gpertea
File length: 18018 byte(s)
Diff to previous 154

wip

Revision 154 - (view) (annotate) - [select for diffs]
Modified Tue Jan 24 02:29:21 2012 UTC (12 years, 7 months ago) by gpertea
File length: 17804 byte(s)
Diff to previous 135

massive update with Daehwan's work

Revision 135 - (view) (annotate) - [select for diffs]
Modified Mon Dec 12 22:28:38 2011 UTC (12 years, 8 months ago) by gpertea
File length: 18715 byte(s)
Diff to previous 68

wip - SplicedSAMHitFactory() still not implemented

Revision 68 - (view) (annotate) - [select for diffs]
Modified Mon Sep 19 20:09:26 2011 UTC (12 years, 11 months ago) by gpertea
File length: 15609 byte(s)
Diff to previous 29

first attempt at accepting different Color qvlen in prep_reads

Revision 29 - (view) (annotate) - [select for diffs]
Added Tue Aug 2 21:24:54 2011 UTC (13 years, 1 month ago) by gpertea
File length: 15303 byte(s)

adding tophat source work