Revision 260 - (view) (annotate) - [select for diffs]
Modified Tue Jul 24 20:10:50 2012 UTC (12 years, 1 month ago) by gpertea
File length: 79413 byte(s)
Diff to previous 259 , to selected 135

wip tophat.py - adding resume feature

Revision 259 - (view) (annotate) - [select for diffs]
Modified Fri Jun 29 19:01:59 2012 UTC (12 years, 2 months ago) by gpertea
File length: 75635 byte(s)
Diff to previous 257 , to selected 135

updated to v2.0.4

Revision 257 - (view) (annotate) - [select for diffs]
Modified Mon Jun 18 21:08:57 2012 UTC (12 years, 2 months ago) by gpertea
File length: 71203 byte(s)
Diff to previous 256 , to selected 135

update

Revision 256 - (view) (annotate) - [select for diffs]
Modified Mon Jun 11 19:35:44 2012 UTC (12 years, 2 months ago) by gpertea
File length: 70966 byte(s)
Diff to previous 254 , to selected 135

sync with Daehwan's fixes

Revision 254 - (view) (annotate) - [select for diffs]
Modified Wed May 30 22:29:09 2012 UTC (12 years, 3 months ago) by gpertea
File length: 72008 byte(s)
Diff to previous 246 , to selected 135

fix_map_ordering wip to throw away not "acceptable" mappings

Revision 246 - (view) (annotate) - [select for diffs]
Modified Wed May 16 22:42:35 2012 UTC (12 years, 3 months ago) by gpertea
File length: 71696 byte(s)
Diff to previous 245 , to selected 135

wip, -M option still broken!

Revision 245 - (view) (annotate) - [select for diffs]
Modified Wed May 16 21:51:01 2012 UTC (12 years, 3 months ago) by gpertea
File length: 71740 byte(s)
Diff to previous 239 , to selected 135

merge-sync attempt

Revision 239 - (view) (annotate) - [select for diffs]
Modified Mon May 14 21:01:08 2012 UTC (12 years, 3 months ago) by gpertea
File length: 55063 byte(s)
Diff to previous 237 , to selected 135

wip prep_reads.cpp, tophat

Revision 237 - (view) (annotate) - [select for diffs]
Modified Mon May 7 23:30:42 2012 UTC (12 years, 3 months ago) by gpertea
File length: 55145 byte(s)
Diff to previous 236 , to selected 135

wip

Revision 236 - (view) (annotate) - [select for diffs]
Modified Fri May 4 22:20:02 2012 UTC (12 years, 4 months ago) by gpertea
File length: 55842 byte(s)
Diff to previous 233 , to selected 135

sync, wip prep_reads

Revision 233 - (view) (annotate) - [select for diffs]
Modified Wed Apr 11 21:05:01 2012 UTC (12 years, 4 months ago) by gpertea
File length: 55083 byte(s)
Diff to previous 222 , to selected 135

Revision 222 - (view) (annotate) - [select for diffs]
Modified Fri Mar 23 22:39:15 2012 UTC (12 years, 5 months ago) by gpertea
File length: 55330 byte(s)
Diff to previous 220 , to selected 135

Revision 220 - (view) (annotate) - [select for diffs]
Modified Thu Mar 22 19:33:00 2012 UTC (12 years, 5 months ago) by gpertea
File length: 55145 byte(s)
Diff to previous 219 , to selected 135

working, writing rejected.bam

Revision 219 - (view) (annotate) - [select for diffs]
Modified Wed Mar 21 21:06:37 2012 UTC (12 years, 5 months ago) by gpertea
File length: 55056 byte(s)
Diff to previous 218 , to selected 135

almost working with bam all over

Revision 218 - (view) (annotate) - [select for diffs]
Modified Tue Mar 20 21:31:57 2012 UTC (12 years, 5 months ago) by gpertea
File length: 54832 byte(s)
Diff to previous 206 , to selected 135

prep_reads now writes bam

Revision 206 - (view) (annotate) - [select for diffs]
Modified Mon Mar 12 18:02:35 2012 UTC (12 years, 5 months ago) by gpertea
File length: 54693 byte(s)
Diff to previous 200 , to selected 135

updated

Revision 200 - (view) (annotate) - [select for diffs]
Modified Fri Mar 9 22:25:25 2012 UTC (12 years, 5 months ago) by gpertea
File length: 54593 byte(s)
Diff to previous 166 , to selected 135

Revision 166 - (view) (annotate) - [select for diffs]
Modified Fri Feb 10 02:45:06 2012 UTC (12 years, 6 months ago) by gpertea
File length: 52075 byte(s)
Diff to previous 163 , to selected 135

resync

Revision 163 - (view) (annotate) - [select for diffs]
Modified Thu Feb 9 03:31:49 2012 UTC (12 years, 6 months ago) by gpertea
File length: 53243 byte(s)
Diff to previous 159 , to selected 135

wip

Revision 159 - (view) (annotate) - [select for diffs]
Modified Mon Jan 30 22:38:08 2012 UTC (12 years, 7 months ago) by gpertea
File length: 53630 byte(s)
Diff to previous 154 , to selected 135

wip

Revision 154 - (view) (annotate) - [select for diffs]
Modified Tue Jan 24 02:29:21 2012 UTC (12 years, 7 months ago) by gpertea
File length: 54016 byte(s)
Diff to previous 135

massive update with Daehwan's work

Revision 135 - (view) (annotate) - [selected]
Modified Mon Dec 12 22:28:38 2011 UTC (12 years, 8 months ago) by gpertea
File length: 43917 byte(s)
Diff to previous 29

wip - SplicedSAMHitFactory() still not implemented

Revision 29 - (view) (annotate) - [select for diffs]
Added Tue Aug 2 21:24:54 2011 UTC (13 years, 1 month ago) by gpertea
File length: 39886 byte(s)
Diff to selected 135

adding tophat source work