Revision 260 - (view) (annotate) - [select for diffs]
Modified Tue Jul 24 20:10:50 2012 UTC (12 years, 1 month ago) by gpertea
File length: 79413 byte(s)
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wip tophat.py - adding resume feature

Revision 259 - (view) (annotate) - [select for diffs]
Modified Fri Jun 29 19:01:59 2012 UTC (12 years, 2 months ago) by gpertea
File length: 75635 byte(s)
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updated to v2.0.4

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Modified Mon Jun 18 21:08:57 2012 UTC (12 years, 2 months ago) by gpertea
File length: 71203 byte(s)
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update

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Modified Mon Jun 11 19:35:44 2012 UTC (12 years, 2 months ago) by gpertea
File length: 70966 byte(s)
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sync with Daehwan's fixes

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Modified Wed May 30 22:29:09 2012 UTC (12 years, 3 months ago) by gpertea
File length: 72008 byte(s)
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fix_map_ordering wip to throw away not "acceptable" mappings

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Modified Wed May 16 22:42:35 2012 UTC (12 years, 3 months ago) by gpertea
File length: 71696 byte(s)
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wip, -M option still broken!

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Modified Wed May 16 21:51:01 2012 UTC (12 years, 3 months ago) by gpertea
File length: 71740 byte(s)
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merge-sync attempt

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Modified Mon May 14 21:01:08 2012 UTC (12 years, 3 months ago) by gpertea
File length: 55063 byte(s)
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wip prep_reads.cpp, tophat

Revision 237 - (view) (annotate) - [select for diffs]
Modified Mon May 7 23:30:42 2012 UTC (12 years, 3 months ago) by gpertea
File length: 55145 byte(s)
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wip

Revision 236 - (view) (annotate) - [select for diffs]
Modified Fri May 4 22:20:02 2012 UTC (12 years, 4 months ago) by gpertea
File length: 55842 byte(s)
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sync, wip prep_reads

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Modified Wed Apr 11 21:05:01 2012 UTC (12 years, 4 months ago) by gpertea
File length: 55083 byte(s)
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Modified Fri Mar 23 22:39:15 2012 UTC (12 years, 5 months ago) by gpertea
File length: 55330 byte(s)
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Revision 220 - (view) (annotate) - [select for diffs]
Modified Thu Mar 22 19:33:00 2012 UTC (12 years, 5 months ago) by gpertea
File length: 55145 byte(s)
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working, writing rejected.bam

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Modified Wed Mar 21 21:06:37 2012 UTC (12 years, 5 months ago) by gpertea
File length: 55056 byte(s)
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almost working with bam all over

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Modified Tue Mar 20 21:31:57 2012 UTC (12 years, 5 months ago) by gpertea
File length: 54832 byte(s)
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prep_reads now writes bam

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Modified Mon Mar 12 18:02:35 2012 UTC (12 years, 5 months ago) by gpertea
File length: 54693 byte(s)
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updated

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Modified Fri Mar 9 22:25:25 2012 UTC (12 years, 5 months ago) by gpertea
File length: 54593 byte(s)
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Modified Fri Feb 10 02:45:06 2012 UTC (12 years, 6 months ago) by gpertea
File length: 52075 byte(s)
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resync

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Modified Thu Feb 9 03:31:49 2012 UTC (12 years, 6 months ago) by gpertea
File length: 53243 byte(s)
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wip

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Modified Mon Jan 30 22:38:08 2012 UTC (12 years, 7 months ago) by gpertea
File length: 53630 byte(s)
Diff to previous 154

wip

Revision 154 - (view) (annotate) - [select for diffs]
Modified Tue Jan 24 02:29:21 2012 UTC (12 years, 7 months ago) by gpertea
File length: 54016 byte(s)
Diff to previous 135

massive update with Daehwan's work

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Modified Mon Dec 12 22:28:38 2011 UTC (12 years, 8 months ago) by gpertea
File length: 43917 byte(s)
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wip - SplicedSAMHitFactory() still not implemented

Revision 29 - (view) (annotate) - [select for diffs]
Added Tue Aug 2 21:24:54 2011 UTC (13 years, 1 month ago) by gpertea
File length: 39886 byte(s)

adding tophat source work