aglappe-jung/proteinstructure/AIGEdge.java

package proteinstructure;

public class AIGEdge {

        private static final double DEFAULT_WEIGHT = 1; 
        private double weight;
        private double distance;
        
        public AIGEdge(double distance) {
                this.weight= DEFAULT_WEIGHT;
                this.distance = distance;
        }
        
        public AIGEdge(double weight, double distance) {
                this.weight = weight;
                this.distance = distance;
        }
        
        public double getWeight() {
                return this.weight;
        }
        
        public double getDistance() {
                return this.distance;
        }

        public AIGEdge copy() {
                return (new AIGEdge(weight, distance));
        }
}
Revision:	438
Committed:	Wed Nov 28 15:44:57 2007 UTC (16 years, 10 months ago) by filippis
File size:	546 byte(s)
Log Message:	AAInfo -isValidContactType, isValidSingleAtomContactType, isValidMultipleAtomContactType takes into account the directionality, the overlapping atoms and the "+" -isOverlapping method has been added AIGEdge -copy method added AIGNode -equals and copy methods has been added AIGraph -getRIGraph now takes argument directed and directionality doesn't depend anymore on isCrossed -distances are now set for RIGNodes in getRIGraph -for undirected, crossed graphs we take care not to add parallel RIGedges in getRIGraph -we set now the secondaryStructure object of RIGraph in getRIGraph -addGraph has been added Box -we throw away wrong check in getDistancesWithinBox - read the comment DbRIGraph -constructors now take argument directed and directionality doesn't depend anymore on isCrossed -distances are read also from db and set for RIGEdges Pdb -get_graph now takes as argument directed and directionality doesn't depend anymore on isCrossed -there is check for forbidden cts in get_graph -cts with + are taken into account in get_graph RIGEdge -setAtomWeight and setDistance methods have been added RIGNode -equals method has been added RIGraph -getObsLength has been deleted -we take care now of the new cts (+,undirected crossed), of null secondary structure case and of distances in write_graph_to_db and write_graph_to_db_fast genDbGraph -argument for directionality is now added
Line	User	Rev	File contents
1	duarte	420	package proteinstructure;
2
3			public class AIGEdge {
4
5			private static final double DEFAULT_WEIGHT = 1;
6			private double weight;
7			private double distance;
8
9			public AIGEdge(double distance) {
10			this.weight= DEFAULT_WEIGHT;
11			this.distance = distance;
12			}
13
14			public AIGEdge(double weight, double distance) {
15			this.weight = weight;
16			this.distance = distance;
17			}
18
19			public double getWeight() {
20			return this.weight;
21			}
22
23			public double getDistance() {
24			return this.distance;
25			}
26
27	filippis	438	public AIGEdge copy() {
28			return (new AIGEdge(weight, distance));
29			}
30	duarte	420	}