Revision 419 - (view) (annotate) - [select for diffs]
Modified Thu Nov 22 14:09:18 2007 UTC (16 years, 11 months ago) by duarte
File length: 401 byte(s)
Diff to previous 172

Re-branching for JUNG2 development

Revision 172 - (view) (annotate) - [select for diffs]
Modified Fri May 25 13:41:19 2007 UTC (17 years, 5 months ago) by duarte
Original Path: trunk/proteinstructure/GraphIdNotFoundError.java
File length: 401 byte(s)
Diff to previous 135

Got rid of some unnecessary warnings

Revision 135 - (view) (annotate) - [select for diffs]
Added Mon May 14 09:49:04 2007 UTC (17 years, 5 months ago) by duarte
Original Path: trunk/proteinstructure/GraphIdNotFoundError.java
File length: 335 byte(s)

NEW FUNCTIONALITY: reading of graph from db is fully implemented for all cases

New chain member variable in the Info classes, read in get_asym_id (Pdbase) and in get_chain_id (Msdsd)
Reading chain also in Pdb in read_pdb_data_from_file
Not reading chain anymore in read_atomData of PdbaseInfo
Added oneletter2threeletter and getoneletter2threeletter to AA class
Changes in Graph:
- added db static vars and getUserName method
- new member variables graphid and sm_id
- new method read_graph_from_db to read contacts, nodes (and sequence from nodes) from db
- new method getgraphid
New Exception class GraphIdNotFoundError