aglappe-jung/proteinstructure/RIGNode.java

package proteinstructure;

/**
 * Class representing a Residue Interaction Graph node, i.e. a residue
 * 
 */
public class RIGNode {

        private int residueSerial;
        private String residueType;
        private SecStrucElement sselem;
        
        
        public RIGNode(int residueSerial, String residueType, SecStrucElement sselem) {
                this.residueSerial = residueSerial;
                this.residueType = residueType;
                this.sselem = sselem;
        }
        
        public RIGNode(int residueSerial, String residueType) {
                this.residueSerial = residueSerial;
                this.residueType = residueType;
                this.sselem = null;
        }
        
        public RIGNode(int residueSerial) {
                this.residueSerial = residueSerial;
                this.residueType = null;
                this.sselem = null;
        }

        public int getResidueSerial() {
                return residueSerial;
        }

        public String getResidueType() {
                return residueType;
        }
        
        public SecStrucElement getSecStrucElement() {
                return sselem;
        }
        
        public String toString() {
                return "V"+residueSerial;
        }
        
        /**
         * Deep copies this RIGNode
         * @return
         */
        public RIGNode copy() {
                SecStrucElement newsselem = this.sselem==null?null:this.sselem.copy();
                RIGNode copy = new RIGNode(this.residueSerial, this.residueType, newsselem);
                return copy;
        }
        
}
Revision:	423
Committed:	Fri Nov 23 13:37:17 2007 UTC (16 years, 10 months ago) by duarte
File size:	1196 byte(s)
Log Message:	New methods in RIGraph copy() and compare(other) Basic testing of copy introduced on testJUNGframework
Line	File contents
1	package proteinstructure;
2
3	/**
4	* Class representing a Residue Interaction Graph node, i.e. a residue
5	*
6	*/
7	public class RIGNode {
8
9	private int residueSerial;
10	private String residueType;
11	private SecStrucElement sselem;
12
13
14	public RIGNode(int residueSerial, String residueType, SecStrucElement sselem) {
15	this.residueSerial = residueSerial;
16	this.residueType = residueType;
17	this.sselem = sselem;
18	}
19
20	public RIGNode(int residueSerial, String residueType) {
21	this.residueSerial = residueSerial;
22	this.residueType = residueType;
23	this.sselem = null;
24	}
25
26	public RIGNode(int residueSerial) {
27	this.residueSerial = residueSerial;
28	this.residueType = null;
29	this.sselem = null;
30	}
31
32	public int getResidueSerial() {
33	return residueSerial;
34	}
35
36	public String getResidueType() {
37	return residueType;
38	}
39
40	public SecStrucElement getSecStrucElement() {
41	return sselem;
42	}
43
44	public String toString() {
45	return "V"+residueSerial;
46	}
47
48	/**
49	* Deep copies this RIGNode
50	* @return
51	*/
52	public RIGNode copy() {
53	SecStrucElement newsselem = this.sselem==null?null:this.sselem.copy();
54	RIGNode copy = new RIGNode(this.residueSerial, this.residueType, newsselem);
55	return copy;
56	}
57
58	}