 ../
|
tools/
|
203
(17 years ago)
by duarte:
Using apache xmlrpc version 3.0 in PyMolServerOutputStream
|
|
proteinstructure/
|
263
(17 years ago)
by duarte:
Fixed potential bug in regex for ATOM lines
|
makeNbhTbl.java
|
24
(18 years ago)
by stehr:
moved executables (classes with main function) to root directory
|
|
testPyMol.java
|
114
(17 years ago)
by duarte:
Initial commit. PyMol API script example, also using our PymolServerOutputStream to send commands directly to server
|
|
testGraph2Pml.java
|
116
(17 years ago)
by filippis:
testGraph2Pml.java fixed according to changes made in Msdsd2Pdb.java
|
|
iterateNbhood.java
|
202
(17 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
testClusterConnection.java
|
202
(17 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
minInfoGain.java
|
202
(17 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
listInfoGain.java
|
202
(17 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
exchangeOne.java
|
202
(17 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
iterateUpperNbhood.java
|
202
(17 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
listInfoLoss.java
|
202
(17 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
maxInfoGain.java
|
202
(17 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
iterateNbs.java
|
202
(17 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
testMySQLConnection.java
|
202
(17 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
testPymolServer.java
|
203
(17 years ago)
by duarte:
Using apache xmlrpc version 3.0 in PyMolServerOutputStream
|
|
iterEvalNbhood.java
|
213
(17 years ago)
by lappe:
Buggy version : 2nd to n2th row have same values
as the first row - ? temp_nbhood stays the same?
|
|
testPdb.java
|
215
(17 years ago)
by stehr:
some clean up of exceptions in Pdb and Graph classes:
merged PdbAcCodeNotFoundError and MsdAcCodeNotFoundError into PdbCodeNotFoundError,
created new PdbChainCodeNotFound, got rid of stderr output, throwing exceptions with informative messages instead
|
|
compareCMs.java
|
215
(17 years ago)
by stehr:
some clean up of exceptions in Pdb and Graph classes:
merged PdbAcCodeNotFoundError and MsdAcCodeNotFoundError into PdbCodeNotFoundError,
created new PdbChainCodeNotFound, got rid of stderr output, throwing exceptions with informative messages instead
|
|
Manifest.txt
|
230
(17 years ago)
by stehr:
added class NodeSet
|
|
cnEvalTargetNbhood.java
|
243
(17 years ago)
by lappe:
Added correction by matrix size (yields avgdeltaRank)
plus correction jcnsize-1 for direct nbs
and pessimistic tie-break
|
|
calculateGridDensity.java
|
250
(17 years ago)
by stehr:
added application to count grid density, suppressed warning for secondary structure reassignment
|
|
benchmarkGraphAlgorithm.java
|
254
(17 years ago)
by duarte:
Also writing graph to file
|
|
genDbGraph.java
|
264
(17 years ago)
by duarte:
Initial commit of genDbGraph script
|
|
cnex1.java
|
265
(17 years ago)
by lappe:
final version
incl. pessimistic tie-break
|
|
cnHashIterNbhood.java
|
266
(17 years ago)
by lappe:
|
|
hashIterNbhood.java
|
267
(17 years ago)
by lappe:
|
|
iterateUpperNbs.java
|
268
(17 years ago)
by lappe:
|
