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root/owl/trunk/src/calcVolsAndSurfs.java
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# Line 1 | Line 1
1   import java.io.File;
2  
3 + import owl.core.runners.CalcSurfVolRunner;
4   import owl.core.structure.Pdb;
5   import owl.core.structure.PdbasePdb;
6   import owl.core.structure.TemplateList;
# Line 31 | Line 32
32                          String pdbChainCode = pdbId.substring(4,5);
33                          Pdb pdb = new PdbasePdb(pdbCode, "pdbase", conn);
34                          pdb.load(pdbChainCode);
35 <                        System.out.printf("%10.3f\t",pdb.calcVolume(CALCVOL_EXE, ""));
36 <                        System.out.printf("%10.3f\n",pdb.calcSurface(CALCSURF_EXE, ""));
35 >                        System.out.printf("%10.3f\t",CalcSurfVolRunner.calcVolume(pdb,CALCVOL_EXE, ""));
36 >                        System.out.printf("%10.3f\n",CalcSurfVolRunner.calcSurface(pdb,CALCSURF_EXE, ""));
37                  }
38                          
39  

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