 ../
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R.java
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14
(18 years ago)
by stehr:
removed ununsed imports and variables
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mySQLConnect.java
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14
(18 years ago)
by stehr:
removed ununsed imports and variables
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calcMST.java
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14
(18 years ago)
by stehr:
removed ununsed imports and variables
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Report.java
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14
(18 years ago)
by stehr:
removed ununsed imports and variables
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MultiOutputStream.java
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27
(18 years ago)
by stehr:
initial import
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MultiOutputStreamTest.java
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27
(18 years ago)
by stehr:
initial import
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PymolServerOutputStream.java
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28
(18 years ago)
by stehr:
prevent overlong commands from being sent to the server
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PymolServerOutputStreamTest.java
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29
(18 years ago)
by stehr:
changed server port to standard
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utils4lh.java
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30
(18 years ago)
by stehr:
introduced generics, so class will compile in Java 5, not sure though whether the functionality is the same as before, will need more testing
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SystemCmd.java
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39
(18 years ago)
by filippis:
Adding comments
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Msdsd2Pdb.java
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40
(18 years ago)
by filippis:
Adding Msdsd2Pdb and PyMol classes
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Machine.java
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45
(18 years ago)
by filippis:
Graph2Pymol class now functional
testGraph2Pymol class now functional with comments also
PyMol class:python strings methods and removeList, concatList, refresh methods added
Machine class: indentation
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PyMol.java
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48
(18 years ago)
by filippis:
Refresh method added plus refresh added before saving image
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Graph2Pml.java
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49
(18 years ago)
by filippis:
More flexibility in coloring, popDefaults/setDefaults methods plus comments
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ColoredStrings.java
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54
(18 years ago)
by stehr:
initial import
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ColoredStringsTest.java
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54
(18 years ago)
by stehr:
initial import
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utils4DB.java
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56
(18 years ago)
by filippis:
execUpdateQuery method added and code in comments was removed
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ClusterConnection.java
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81
(18 years ago)
by duarte:
Changed the Connection fields to be MySQLConnection.
Thanks to this, simplify considerably a lot of the methods by using the MySQLConnection methods.
Got rid of method loadSQLDriver and URL final field
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MySQLConnection.java
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84
(18 years ago)
by duarte:
Fixed bug in getTables4Db. Was closing the connection. Shouldn't do this!
Add method getAllIds4KeyAndTables, moved from DataDistribution. It makes more sense to have it here.
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DataDistribution.java
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85
(18 years ago)
by duarte:
MAJOR change.
Split DataDistribution into 2 classes: DataDistributer and DataDistribution.
I haven't actually changed or added functionality
DataDistributer deals with the distribution of the data, while DataDistribution deals with things to do when data is already distributed, right now is only a few data checks
Note that DataDistributer now has two db fields: srcDb and destDb. This is different to before, when destDb was rather a parameter passed as arguments to the methods
Methods in DataDistributer have been tidied up a little (specially load and dump ones)
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DataDistributer.java
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86
(18 years ago)
by duarte:
Added PARALLELISM in load/dump of tables using new class QueryThread (extends Thread)
Modified methods loadData, dumpData and loadSplitData to dump/load parallely in cases that is useful by using the QueryThread class.
New method initializeDirs(String[]) to do some of the dir initialization that was in dumpData
Got rid of one of the getConnectionToNode method, not needed anymore
New important 2 final static variables: NUM_CONCURRENT_READ_QUERIES and NUM_CONCURRENT_WRITE_QUERIES. They define how much concurrency we want in reads/writes to nfs for loads/dumps
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QueryThread.java
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86
(18 years ago)
by duarte:
Added PARALLELISM in load/dump of tables using new class QueryThread (extends Thread)
Modified methods loadData, dumpData and loadSplitData to dump/load parallely in cases that is useful by using the QueryThread class.
New method initializeDirs(String[]) to do some of the dir initialization that was in dumpData
Got rid of one of the getConnectionToNode method, not needed anymore
New important 2 final static variables: NUM_CONCURRENT_READ_QUERIES and NUM_CONCURRENT_WRITE_QUERIES. They define how much concurrency we want in reads/writes to nfs for loads/dumps
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