 ../
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R.java
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14
(18 years ago)
by stehr:
removed ununsed imports and variables
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mySQLConnect.java
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14
(18 years ago)
by stehr:
removed ununsed imports and variables
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calcMST.java
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14
(18 years ago)
by stehr:
removed ununsed imports and variables
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Report.java
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14
(18 years ago)
by stehr:
removed ununsed imports and variables
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MultiOutputStream.java
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27
(18 years ago)
by stehr:
initial import
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MultiOutputStreamTest.java
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27
(18 years ago)
by stehr:
initial import
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PymolServerOutputStream.java
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28
(18 years ago)
by stehr:
prevent overlong commands from being sent to the server
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PymolServerOutputStreamTest.java
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29
(18 years ago)
by stehr:
changed server port to standard
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utils4lh.java
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30
(18 years ago)
by stehr:
introduced generics, so class will compile in Java 5, not sure though whether the functionality is the same as before, will need more testing
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SystemCmd.java
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39
(18 years ago)
by filippis:
Adding comments
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Msdsd2Pdb.java
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40
(18 years ago)
by filippis:
Adding Msdsd2Pdb and PyMol classes
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Machine.java
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45
(18 years ago)
by filippis:
Graph2Pymol class now functional
testGraph2Pymol class now functional with comments also
PyMol class:python strings methods and removeList, concatList, refresh methods added
Machine class: indentation
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PyMol.java
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48
(18 years ago)
by filippis:
Refresh method added plus refresh added before saving image
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Graph2Pml.java
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49
(18 years ago)
by filippis:
More flexibility in coloring, popDefaults/setDefaults methods plus comments
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ColoredStrings.java
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54
(18 years ago)
by stehr:
initial import
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ColoredStringsTest.java
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54
(18 years ago)
by stehr:
initial import
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utils4DB.java
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56
(18 years ago)
by filippis:
execUpdateQuery method added and code in comments was removed
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QueryThread.java
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86
(18 years ago)
by duarte:
Added PARALLELISM in load/dump of tables using new class QueryThread (extends Thread)
Modified methods loadData, dumpData and loadSplitData to dump/load parallely in cases that is useful by using the QueryThread class.
New method initializeDirs(String[]) to do some of the dir initialization that was in dumpData
Got rid of one of the getConnectionToNode method, not needed anymore
New important 2 final static variables: NUM_CONCURRENT_READ_QUERIES and NUM_CONCURRENT_WRITE_QUERIES. They define how much concurrency we want in reads/writes to nfs for loads/dumps
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MySQLConnection.java
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94
(18 years ago)
by duarte:
Simplified the code for dealing with text/numerical keys.
Now there's no more double methods Integer/String, rather the methos use a generic Object[] that stores either String[] or Integer[] depending on the case.
Thus modified a few methods in DataDistributer, DataDistribution and MySQLConnection.
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DataDistribution.java
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95
(18 years ago)
by duarte:
Adapted also ClusterConnection and checking methods in DataDistribution to text/numeric keys.
Some methods in ClusterConnection have not changed at all even though they deal with keys. I haven't changed them because they are applicable only to numeric keys:
insertIdxInMaster, getLastInsertId and getIdxSet
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ClusterConnection.java
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95
(18 years ago)
by duarte:
Adapted also ClusterConnection and checking methods in DataDistribution to text/numeric keys.
Some methods in ClusterConnection have not changed at all even though they deal with keys. I haven't changed them because they are applicable only to numeric keys:
insertIdxInMaster, getLastInsertId and getIdxSet
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DataDistributer.java
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96
(18 years ago)
by duarte:
Slight improve in insertIdsToKeyMaster method. Instead of querying in each insert for the nodeid, we get the node names to node id mapping in a HashMap through another query.
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