[BiO BB] perl script

[Pooja]

Hi,
Find perl script following the below link. you may need to make some changes
as per your requirement.
http://bioinformatics.weizmann.ac.il/courses/prog2/perlBioinfo/GenBank.html

Following links may be of some help to you :
http://bioperl.org/Core/POD/Bio/DB/WebDBSeqI.html
http://bioperl.org/Core/POD/Bio/DB/SwissProt.html

Batch retrieval is provided by SwissProt
http://www.expasy.org/sprot/sprot-retrieve-list.html

Although EMBL doesn't provides batch retrieval but one can write a smart
parser to retrieve the sequences. The accession numbers listed in a text
file could be entered in search field (comma separated) at page following
the below link:

http://www.ebi.ac.uk/cgi-bin/emblfetch

I may be missing something !!

Good luck

Pooja


----- Original Message -----
From: "kiran challapalli" <bioinformaticsckk at yahoo.co.in>
To: <bio_bulletin_board at bioinformatics.org>
Sent: Monday, June 10, 2002 12:03 AM
Subject: [BiO BB] perl script


> Hi everyone,
> I have text file with list of accession Ids for NcBI
> entries. I want to know wether any script available on
> the net to retieve the entries and store on my
> computer in text format. I want to do the same job
> with other databases like swissprot and embl.
> I know that atleast NCBI has the facility to upload
> the text file. But i want to make the job simpler.
> Any suggestions or ideas?
> Thanks in advance,
> Kiran
>
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