[BiO BB] Tree/hierarchcal clustering software?

[Chris Dwan (CCGB)]

We have a clustering toolkit under a web interface at:

  http://cluto.ccgb.umn.edu/cgi-bin/wCluto/wCluto.cgi

I've never used it myself.

-Chris Dwan
 University of Minnesota

On Mon, 17 Nov 2003, Iddo Friedberg wrote:

>
> Hi,
>
> (Apologies for cross-posting).
>
> I have data in the form of a distance matrix (well, similarity, but
> easily convertible). I would like a hierarchical clustering software which:
>
> 1) Has a good number of amalgamation rules. I want to throw as many
> things as I can at my data set. A good number of distance rules
> (Eucledian, squared, Chebychev etc.) would be nice too.
>
> 2) A nice tree display. Failing that, an output in one of the standard
> formats which I can display using TreeView, or somesuch.
>
> I know I can use Neighbor from Phylip, I just wondered what else is out
> there. Any reply would be helpful.
>
> Thanks,
>
> Iddo
>
> --
> Iddo Friedberg, Ph.D.
> The Burnham Institute
> 10901 N. Torrey Pines Rd.
> La Jolla, CA 92037
> USA
> Tel: +1 (858) 646 3100 x3516
> Fax: +1 (858) 646 3171
> http://ffas.ljcrf.edu/~iddo
>
>
> --
> Iddo Friedberg, Ph.D.
> The Burnham Institute
> 10901 N. Torrey Pines Rd.
> La Jolla, CA 92037
> USA
> Tel: +1 (858) 646 3100 x3516
> Fax: +1 (858) 646 3171
> http://ffas.ljcrf.edu/~iddo
>
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