[BiO BB] a question about footprinter
Ryan Golhar
golharam at umdnj.edu
Mon Sep 12 00:23:44 EDT 2005
Try emailing the authors. I remember having a similar problem, but
don't remember the solution. I believe it was setting the version of
GCC you have from GCC3 to GCC2 in the makefile:
-#GCCVERSION = GCC3
-GCCVERSION = GCC2
+GCCVERSION = GCC3
+#GCCVERSION = GCC2
Ryan
--
Ryan Golhar - golharam at umdnj.edu
The Informatics Institute of UMDNJ
-----Original Message-----
From: bio_bulletin_board-bounces+golharam=umdnj.edu at bioinformatics.org
[mailto:bio_bulletin_board-bounces+golharam=umdnj.edu at bioinformatics.org
] On Behalf Of Pavlos Pavlidis
Sent: Tuesday, September 06, 2005 2:21 AM
To: bio_bulletin_board at bioinformatics.org
Subject: [BiO BB] a question about footprinter
Hi all,
I have downloaded footprinter 2.0 for linux, and when I'm trying to
install it, I get the following error message.
I'm using debian.
Thanks
Pavlos
pavlidis at metsis:~/FootPrinter2.0$ make
g++ -O2 -I. -DSHORT_MOTIFS -c merging.cc
In file included from /usr/include/c++/3.3/backward/iostream.h:31,
from FootPrinter.h:19,
from merging.h:15,
from merging.cc:15:
/usr/include/c++/3.3/backward/backward_warning.h:32:2: warning: #warning
This file includes at least one deprecated or antiquated header. Please
consider using one of the 32 headers found in section 17.4.1.2 of the
C++ standard. Examples include substituting the <X> header for the <X.h>
header for C++ includes, or <sstream> instead of the deprecated header
<strstream.h>. To disable this warning use -Wno-deprecated.
In file included from stl/iterator.h:36,
from stl/algobase.h:33,
from stl/deque.h:30,
from FootPrinter.h:21,
from merging.h:15,
from merging.cc:15:
stl/stl_iterator.h:249: warning:
`iterator_traits<Iterator>::difference_type'
is implicitly a typename
stl/stl_iterator.h:249: warning: implicit typename is deprecated, please
see
the documentation for details
stl/stl_iterator.h: In function `typename
iterator_traits<Iterator>::difference_type __distance(InputIterator,
InputIterator, input_iterator_tag)':
stl/stl_iterator.h:250: warning:
`iterator_traits<Iterator>::difference_type'
is implicitly a typename
stl/stl_iterator.h:250: warning: implicit typename is deprecated, please
see
the documentation for details
stl/stl_iterator.h: At global scope:
stl/stl_iterator.h:260: warning:
`iterator_traits<Iterator>::difference_type'
is implicitly a typename
stl/stl_iterator.h:260: warning: implicit typename is deprecated, please
see
the documentation for details
stl/stl_iterator.h:266: warning:
`iterator_traits<Iterator>::difference_type'
is implicitly a typename
stl/stl_iterator.h:266: warning: implicit typename is deprecated, please
see
the documentation for details
stl/stl_iterator.h:618: warning:
`reverse_iterator<Iterator>::difference_type'
is implicitly a typename
stl/stl_iterator.h:618: warning: implicit typename is deprecated, please
see
the documentation for details
In file included from stl/iterator.h:39,
from stl/algobase.h:33,
from stl/deque.h:30,
from FootPrinter.h:21,
from merging.h:15,
from merging.cc:15:
stl/type_traits.h:54: error: redefinition of `struct __true_type'
/usr/include/c++/3.3/bits/type_traits.h:90: error: previous definition
of `
struct __true_type'
stl/type_traits.h:57: error: redefinition of `struct __false_type'
/usr/include/c++/3.3/bits/type_traits.h:91: error: previous definition
of `
struct __false_type'
stl/type_traits.h:61: error: redefinition of `struct __type_traits<_Tp>'
/usr/include/c++/3.3/bits/type_traits.h:94: error: previous definition
of `
struct __type_traits<_Tp>'
stl/type_traits.h:93: error: redefinition of `struct
__type_traits<char>'
/usr/include/c++/3.3/bits/type_traits.h:131: error: previous definition
of `
struct __type_traits<char>'
stl/type_traits.h:101: error: redefinition of `struct
__type_traits<signed
char>'
/usr/include/c++/3.3/bits/type_traits.h:139: error: previous definition
of `
struct __type_traits<signed char>'
stl/type_traits.h:109: error: redefinition of `struct
__type_traits<unsigned
char>'
/usr/include/c++/3.3/bits/type_traits.h:147: error: previous definition
of `
struct __type_traits<unsigned char>'
stl/type_traits.h:117: error: redefinition of `struct
__type_traits<short int>'
/usr/include/c++/3.3/bits/type_traits.h:163: error: previous definition
of `
struct __type_traits<short int>'
stl/type_traits.h:125: error: redefinition of `struct
__type_traits<short
unsigned int>'
/usr/include/c++/3.3/bits/type_traits.h:171: error: previous definition
of `
struct __type_traits<short unsigned int>'
stl/type_traits.h:133: error: redefinition of `struct
__type_traits<int>'
/usr/include/c++/3.3/bits/type_traits.h:179: error: previous definition
of `
struct __type_traits<int>'
stl/type_traits.h:141: error: redefinition of `struct
__type_traits<unsigned
int>'
/usr/include/c++/3.3/bits/type_traits.h:187: error: previous definition
of `
struct __type_traits<unsigned int>'
stl/type_traits.h:149: error: redefinition of `struct __type_traits<long
int>'
/usr/include/c++/3.3/bits/type_traits.h:195: error: previous definition
of `
struct __type_traits<long int>'
stl/type_traits.h:157: error: redefinition of `struct __type_traits<long
unsigned int>'
/usr/include/c++/3.3/bits/type_traits.h:203: error: previous definition
of `
struct __type_traits<long unsigned int>'
stl/type_traits.h:165: error: redefinition of `struct
__type_traits<float>'
/usr/include/c++/3.3/bits/type_traits.h:227: error: previous definition
of `
struct __type_traits<float>'
stl/type_traits.h:173: error: redefinition of `struct
__type_traits<double>'
/usr/include/c++/3.3/bits/type_traits.h:235: error: previous definition
of `
struct __type_traits<double>'
stl/type_traits.h:181: error: redefinition of `struct __type_traits<long
double>'
/usr/include/c++/3.3/bits/type_traits.h:243: error: previous definition
of `
struct __type_traits<long double>'
stl/type_traits.h:192: error: redefinition of `struct
__type_traits<_Tp*>'
/usr/include/c++/3.3/bits/type_traits.h:252: error: previous definition
of `
struct __type_traits<_Tp*>'
In file included from stl/alloc.h:21,
from stl/deque.h:31,
from FootPrinter.h:21,
from merging.h:15,
from merging.cc:15:
stl/stl_alloc.h:677: warning: `__default_alloc_template<threads,
inst>::obj' is
implicitly a typename
stl/stl_alloc.h:677: warning: implicit typename is deprecated, please
see the
documentation for details
In file included from stl/deque.h:32,
from FootPrinter.h:21,
from merging.h:15,
from merging.cc:15:
stl/stl_deque.h:739: warning: `deque<T, Alloc, BufSiz>::iterator' is
implicitly
a typename
stl/stl_deque.h:739: warning: implicit typename is deprecated, please
see the
documentation for details
In file included from stl/queue.h:35,
from FootPrinter.h:22,
from merging.h:15,
from merging.cc:15:
stl/stl_bvector.h:255:30: stl_vector.h: No such file or directory In
file included from stl/list.h:32,
from FootPrinter.h:23,
from merging.h:15,
from merging.cc:15:
stl/stl_list.h:414: warning: `list<T, Alloc>::iterator' is implicitly a
typename
stl/stl_list.h:414: warning: implicit typename is deprecated, please see
the
documentation for details
In file included from stl/stl_hashtable.h:41,
from stl/hash_map.h:31,
from FootPrinter.h:26,
from merging.h:15,
from merging.cc:15:
stl/stl_tempbuf.h:62: warning: `iterator_traits<Iterator>::value_type'
is
implicitly a typename
stl/stl_tempbuf.h:62: warning: implicit typename is deprecated, please
see the
documentation for details
In file included from stl/hash_map.h:31,
from FootPrinter.h:26,
from merging.h:15,
from merging.cc:15:
stl/stl_hashtable.h: In member function `__hashtable_iterator<Value,
Key,
HashFcn, ExtractKey, EqualKey, Alloc> hashtable<Value, Key, HashFcn,
ExtractKey, EqualKey, Alloc>::begin()':
stl/stl_hashtable.h:262: warning: `vector<__hashtable_node<Value>*,
Alloc>::iterator' is implicitly a typename
stl/stl_hashtable.h:262: warning: implicit typename is deprecated,
please see
the documentation for details
stl/stl_hashtable.h: In member function `__hashtable_iterator<Value,
Key,
HashFcn, ExtractKey, EqualKey, Alloc>& __hashtable_iterator<Value,
Key,
HashFcn, ExtractKey, EqualKey, Alloc>::operator++()':
stl/stl_hashtable.h:537: warning: `vector<__hashtable_node<Value>*,
Alloc>::iterator' is implicitly a typename
stl/stl_hashtable.h:537: warning: implicit typename is deprecated,
please see
the documentation for details
stl/stl_hashtable.h: In member function `void hashtable<Value, Key,
HashFcn,
ExtractKey, EqualKey, Alloc>::clear()':
stl/stl_hashtable.h:958: warning: `vector<__hashtable_node<Value>*,
Alloc>::iterator' is implicitly a typename
stl/stl_hashtable.h:958: warning: implicit typename is deprecated,
please see
the documentation for details
make: *** [merging.o] Error 1
_______________________________________________
Bioinformatics.Org general forum -
BiO_Bulletin_Board at bioinformatics.org
https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
More information about the BBB
mailing list