[BiO BB] Hierarchical Probe Design

[Bossers, Alex]

Hi

Try this. It's the HPD you are looking for.

 

http://brcapp.kribb.re.kr/

 

Alex

 

 

________________________________

Van: bio_bulletin_board-bounces+alex.bossers=wur.nl at bioinformatics.org
[mailto:bio_bulletin_board-bounces+alex.bossers=wur.nl at bioinformatics.or
g] Namens Cox, Mike
Verzonden: vrijdag 3 november 2006 16:45
Aan: BiO_Bulletin_Board at bioinformatics.org
Onderwerp: [BiO BB] Hierarchical Probe Design

 

Dear All,

Was wondering whether anyone knew of a suitable program for preparing
hierarchical groups of probes based on alignments of DNA, such as
Hierarchical Probe Designer:

Design of long oligonucleotide probes for functional gene detection in a
microbial community; Chung et al.; Bioinformatics 2005 21(22):4092-4100

I would love to use this program, which is uses phylogenetic trees as a
basis for probe design, but despite extensive searching, I can no longer
find it.  The URL quoted in the paper is no longer current.

thanks very much for any help

Mike Cox

--------------------------------
Postdoctoral Research Associate
Division of Genomics and Molecular Microbiology
School of Biological Sciences
University of Liverpool
Crown Street
Liverpool
L69 7ZB

Office 0151 7954576
Lab 0151 7954580




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