[BiO BB] Modeling of small peptides

[Xue, Li]

Hi Shameer, 

Here are some links:

1. HMM method for prediction of signal peptides:
http://www.cbs.dtu.dk/services/SignalP/abstract.php  

2. Support Vector Machine Prediction Of Signal Peptide Cleavage Site (2002)
http://citeseer.ist.psu.edu/526978.html

Both SVM and HMM are Data Mining approach. Hope this will help.

Li

> Dear Li, Thanks for your reply.
> It will be great if you can point me towards any lierature / web reference.
> Thanks,
> Shameer
> 
> On 1/5/07, Xue, Li <lixue at iastate.edu> wrote:
> >
> > As far as I know, both Hidden Markov Model and SVM have been used in
> > modeling
> > small peptides.
> >
> > Li
> > > Dear All,
> > >
> > > What is the best approach to model small peptides ?
> > > Is it homology (i think ... no ! ) or ab-initio or any other efficient
> > > methods or servers / programs available ?
> > >
> > > Please share your knowledge,
> > > Thanks in advance !!!
> > > --
> > > S K
> > > _______________________________________________
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> >
> >
> > Xue, Li
> > Bioinformatics and Computational Biology
> > Iowa State University, Ames, IA  50011
> > 515-520-1676
> >
> >
> >
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Xue, Li
Bioinformatics and Computational Biology
Iowa State University, Ames, IA  50011
515-520-1676