[BiO BB] Newbie question.

[Donnie Darko]

Hi folks,

Suppose I have a novel gene whose product is a DNA binding protein, how
would I go about locating potential binding sites where this protein could
bind? I'm only interested in finding sites for this specific protein and not
a general scan of tfbs.

I've extracted upstream sequences of genes that I'm interested in but I
can't think of a way forward.

Cheers and belated happy new year :-P