[Bioclusters] NCBI 2.2.9 compile error on x86-64 Fedora Core 2

[Doug Shubert]

Hello All,

If your getting an error compiling NCBI 2.2.9 on
Fedora Core 2 x86-64, try making the following changes
from /lib to /lib64 in /ncbi/platform/linux.ncbi.mk

NCBI_VIBFLAG = -I/usr/X11R6/include -L/usr/X11R6/lib64 -DWIN_MOTIF
NCBI_DISTVIBLIBS = -L/usr/X11R6/lib64 -lXmu -lXm -lXt -lSM -lICE -lXext 
-lXp -lX11 -ldl
OPENGL_LIBS = -L/usr/X11R6/lib64 -lGL -lGLU
NCBI_OGLLIBS = -L/usr/X11R6/lib64 -lGL -lGLU

Doug

BBS times run in 2GB ram disk

1,1,1641
2,1,1647
2,2,1685
3,4,3289
3,1,3296
3,3,3332
3,2,3335
4,1,863
5,1,1683
5,2,1690
6,1,848

cat /proc/cpuinfo

processor       : 0
vendor_id       : AuthenticAMD
cpu family      : 15
model           : 5
model name      : AMD Opteron(tm) Processor 240
stepping        : 1
cpu MHz         : 1395.673
cache size      : 1024 KB
fpu             : yes
fpu_exception   : yes
cpuid level     : 1
wp              : yes
flags           : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge 
mca cmov pat pse36 clflush mmx fxsr sse sse2 syscall nx mmxext lm 
3dnowext 3dnow
bogomips        : 2744.32
TLB size        : 1088 4K pages
clflush size    : 64
cache_alignment : 64
address sizes   : 40 bits physical, 48 bits virtual
power management: ts ttp

processor       : 1
vendor_id       : AuthenticAMD
cpu family      : 15
model           : 5
model name      : AMD Opteron(tm) Processor 240
stepping        : 1
cpu MHz         : 1395.673
cache size      : 1024 KB
fpu             : yes
fpu_exception   : yes
cpuid level     : 1
wp              : yes
flags           : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge 
mca cmov pat pse36 clflush mmx fxsr sse sse2 syscall nx mmxext lm 
3dnowext 3dnow
bogomips        : 2785.28
TLB size        : 1088 4K pages
clflush size    : 64
cache_alignment : 64
address sizes   : 40 bits physical, 48 bits virtual
power management: ts ttp

memtest86 = 956 MB/sec

 cat /proc/meminfo
MemTotal:      3097592 kB
MemFree:         24540 kB
Buffers:       2132616 kB
Cached:         380936 kB
SwapCached:          0 kB
Active:        1658056 kB
Inactive:       998340 kB
HighTotal:           0 kB
HighFree:            0 kB
LowTotal:      3097592 kB
LowFree:         24540 kB
SwapTotal:     2040244 kB
SwapFree:      2040244 kB
Dirty:               4 kB
Writeback:           0 kB
Mapped:         177416 kB
Slab:           393060 kB
Committed_AS:   369020 kB
PageTables:       6508 kB
VmallocTotal: 536870911 kB
VmallocUsed:      1268 kB
VmallocChunk: 536869643 kB
HugePages_Total:     0
HugePages_Free:      0
Hugepagesize:     2048 kB