[Biodevelopers] BIND API

[Dan Bolser]

On Thu, 24 Feb 2005, Siddhartha Basu wrote:

>Hi Dan,
>I am trying to do same kind of analysis but haven't made any RDBMS 
>solution yet. Will highly appreciate if you share.

I will hapily send you the files. Should / could I put them some where
public? 

Some ideas...

* the BIND sourceforge site 
* into biosql project
* a bioinformatics.org project


Any suggestions?



>
>Thanks.
>
>-siddhartha
>
>Dan Bolser wrote:
>> On Wed, 23 Feb 2005, rich wrote:
>> 
>> 
>>>Hi, i can't seem to find any bioperl modules and i'm pretty sure the 
>>>seqhound api doesn't deal with the BIND database. Anyone got any neat 
>>>automated way of querying the db
>>>short of downloading the text files form the BIND site,
>> 
>> 
>> I have been using the text files to build a local mysql instance of the
>> BIND data. I found this a very useful and convenient way to construct
>> complex queries over the data.
>> 
>> If you like I can give you my perl parsers and schema, as I worked quite
>> hard to document the 'build' pipeline (although it is all manually
>> executed in about 5-10 steps).
>> 
>> Dan.
>> 
>> 
>>>cheers
>>>Rich
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>> 
>> 
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