Basic Information
Gene ID 100049368
Gene Name sox2
Full Name SOX3 protein
Organism Oryzias latipes [8090]

Cross Reference
UniProt Q9PT76 UniGene Ola.1246
PDB NULL OMIM NULL
KEGG ola:100049368 UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
ENSORLP00000002212 Gene3D G3DSA:1.10.30.10 IPR009071 33 113 1.10e-40 High mobility group box domain
ENSORLP00000002212 Pfam PF00505 IPR009071 35 103 5.70e-27 High mobility group box domain
ENSORLP00000002212 Pfam PF12336 IPR022097 104 183 1.30e-33 Transcription factor SOX
ENSORLP00000002212 ProSiteProfiles PS50118 IPR009071 35 103 0.00e-00 High mobility group box domain
ENSORLP00000002212 SMART SM00398 IPR009071 34 104 5.60e-31 High mobility group box domain
ENSORLP00000002212 SUPERFAMILY SSF47095 IPR009071 26 107 0.00e-00 High mobility group box domain

Pfam Annotation
Protein Pfam ID E.value Name Description
ENSORLP00000002212 PF12336 1.3e-33 SOXp SOX transcription factor
ENSORLP00000002212 PF00505 3.7e-27 HMG_box HMG (high mobility group) box
ENSORLP00000002212 PF09011 3.6e-11 HMG_box_2 HMG-box domain

Gene Ontology Annotation
Protein Entry Name Space Description
ENSORLP00000002212 GO:0000122 biological_process negative regulation of transcription from RNA polymerase II promoter
ENSORLP00000002212 GO:0006351 biological_process transcription, DNA-templated
ENSORLP00000002212 GO:0006355 biological_process regulation of transcription, DNA-templated
ENSORLP00000002212 GO:0007275 biological_process multicellular organismal development
ENSORLP00000002212 GO:0005634 cellular_component nucleus
ENSORLP00000002212 GO:0003677 molecular_function DNA binding
ENSORLP00000002212 GO:0043565 molecular_function sequence-specific DNA binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
10224 Saccoglossus kowalevskii 100303496 8128 Oreochromis niloticus 100698575
8083 Xiphophorus maculatus 102231761 13735 Pelodiscus sinensis 102464046
7070 Tribolium castaneum 663351 10141 Cavia porcellus ENSCPOG00000022456
69293 Gasterosteus aculeatus ENSGACG00000017181 8049 Gadus morhua ENSGMOG00000020190
9785 Loxodonta africana ENSLAFG00000030155 59463 Myotis lucifugus ENSMLUG00000000946
13616 Monodelphis domestica ENSMODG00000013932 9986 Oryctolagus cuniculus ENSOCUG00000016779
9813 Procavia capensis ENSPCAG00000009165 7897 Latimeria chalumnae 102345911
9544 Macaca mulatta 696412 9595 Gorilla gorilla ENSGGOG00000008130
30611 Otolemur garnettii ENSOGAG00000025781 7757 Petromyzon marinus ENSPMAG00000009737
9305 Sarcophilus harrisii ENSSHAG00000007719

Paralogs
100304454