Basic Information
Gene ID 171679
Gene Name hmbx-1; CELE_F54A5.1, F54A5.1
Full Name Protein HMBX-1
Organism Caenorhabditis elegans [6239]

Cross Reference
UniProt Q9TYT0 UniGene Cel.38957
PDB NULL OMIM NULL
KEGG cel:CELE_F54A5.1 UCSC F54A5.1

Protein Interactions
DIP DIP-27471N
IntAct Q9TYT0
MINT MINT-1049021
STRING 6239.F54A5.1

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
F54A5.1 Gene3D G3DSA:1.10.10.60 IPR009057 214 294 1.40e-19 Homeodomain-like
F54A5.1 Gene3D G3DSA:1.10.260.40 IPR010982 112 192 3.70e-13 Lambda repressor-like, DNA-binding domain
F54A5.1 Pfam PF00046 IPR001356 216 289 5.00e-07 Homeobox domain
F54A5.1 ProSiteProfiles PS50071 IPR001356 213 290 0.00e-00 Homeobox domain
F54A5.1 SMART SM00389 IPR001356 215 294 4.70e-13 Homeobox domain
F54A5.1 SUPERFAMILY SSF46689 IPR009057 210 292 0.00e-00 Homeodomain-like
F54A5.1 SUPERFAMILY SSF47413 IPR010982 104 193 0.00e-00 Lambda repressor-like, DNA-binding domain

Pfam Annotation
Protein Pfam ID E.value Name Description
F54A5.1 PF00046 6.6e-08 Homeobox Homeobox domain
F54A5.1 PF01381 1.8e-06 HTH_3 Helix-turn-helix
F54A5.1 PF04814 3e-06 HNF-1_N Hepatocyte nuclear factor 1 (HNF-1), N terminus
F54A5.1 PF13744 0.00011 HTH_37 Helix-turn-helix domain

Gene Ontology Annotation
Protein Entry Name Space Description
F54A5.1 GO:0006351 biological_process transcription, DNA-templated
F54A5.1 GO:0045892 biological_process negative regulation of transcription, DNA-templated
F54A5.1 GO:0045893 biological_process positive regulation of transcription, DNA-templated
F54A5.1 GO:0005634 cellular_component nucleus
F54A5.1 GO:0005737 cellular_component cytoplasm
F54A5.1 GO:0003700 molecular_function sequence-specific DNA binding transcription factor activity
F54A5.1 GO:0005515 molecular_function protein binding
F54A5.1 GO:0043565 molecular_function sequence-specific DNA binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
7897 Latimeria chalumnae 102352762 10090 Mus musculus 219150
10116 Rattus norvegicus 305968 9598 Pan troglodytes 472727
9913 Bos taurus 539099 28377 Anolis carolinensis ENSACAG00000010160
9796 Equus caballus ENSECAG00000008240 69293 Gasterosteus aculeatus ENSGACG00000004391
9031 Gallus gallus ENSGALG00000016633 8049 Gadus morhua ENSGMOG00000002742
59463 Myotis lucifugus ENSMLUG00000007478 9544 Macaca mulatta ENSMMUG00000014981
13616 Monodelphis domestica ENSMODG00000008788 8090 Oryzias latipes ENSORLG00000020883
132908 Pteropus vampyrus ENSPVAG00000004238 9823 Sus scrofa ENSSSCG00000009682
99883 Tetraodon nigroviridis ENSTNIG00000011904 31033 Takifugu rubripes ENSTRUG00000006366
9739 Tursiops truncatus ENSTTRG00000015467 9615 Canis familiaris 486089
7955 Danio rerio ENSDARG00000018913 8128 Oreochromis niloticus ENSONIG00000001328
9601 Pongo abelii ENSPPYG00000018480 9305 Sarcophilus harrisii ENSSHAG00000016211
9478 Tarsius syrichta ENSTSYG00000001109