Basic Information
Gene ID 407873
Gene Name sox2; TNeu054c10.1
Full Name Transcription factor Sox-2
Organism Xenopus tropicalis [8364]

Cross Reference
UniProt Q6NVN0 UniGene Str.6201
PDB NULL OMIM NULL
KEGG xtr:407873 UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING 8364.ENSXETP00000004031

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
ENSXETP00000004031 Gene3D G3DSA:1.10.30.10 IPR009071 36 115 9.50e-41 High mobility group box domain
ENSXETP00000004031 Pfam PF00505 IPR009071 37 105 5.00e-27 High mobility group box domain
ENSXETP00000004031 Pfam PF12336 IPR022097 106 194 2.70e-29 Transcription factor SOX
ENSXETP00000004031 ProSiteProfiles PS50118 IPR009071 37 105 0.00e-00 High mobility group box domain
ENSXETP00000004031 SMART SM00398 IPR009071 36 106 5.90e-31 High mobility group box domain
ENSXETP00000004031 SUPERFAMILY SSF47095 IPR009071 27 109 0.00e-00 High mobility group box domain

Pfam Annotation
Protein Pfam ID E.value Name Description
ENSXETP00000004031 PF12336 2.7e-29 SOXp SOX transcription factor
ENSXETP00000004031 PF00505 3e-27 HMG_box HMG (high mobility group) box
ENSXETP00000004031 PF09011 1e-11 HMG_box_2 HMG-box domain

Gene Ontology Annotation
Protein Entry Name Space Description
ENSXETP00000004031 GO:0006351 biological_process transcription, DNA-templated
ENSXETP00000004031 GO:0006355 biological_process regulation of transcription, DNA-templated
ENSXETP00000004031 GO:0007275 biological_process multicellular organismal development
ENSXETP00000004031 GO:0005634 cellular_component nucleus
ENSXETP00000004031 GO:0003677 molecular_function DNA binding
ENSXETP00000004031 GO:0043565 molecular_function sequence-specific DNA binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
10224 Saccoglossus kowalevskii 100303496 9601 Pongo abelii 100460719
61853 Nomascus leucogenys 100605885 400682 Amphimedon queenslandica 100632156
30195 Bombus terrestris 100643013 10029 Cricetulus griseus 100759815
143995 Megachile rotundata 100879499 34638 Metaseiulus occidentalis 100898556
9597 Pan paniscus 100976706 9555 Papio anubis 101022620
39432 Saimiri boliviensis 101037370 9669 Mustela putorius furo 101690298
13735 Pelodiscus sinensis 102443720 7668 Strongylocentrotus purpuratus 373202
9031 Gallus gallus 396105 7029 Acyrthosiphon pisum 100164548
6087 Hydra magnipapillata 100205840 7425 Nasonia vitripennis 100678051
8128 Oreochromis niloticus 100695175 132113 Bombus impatiens 100742000
7463 Apis florea 100866912 30611 Otolemur garnettii 100963354
31033 Takifugu rubripes 101073272 8090 Oryzias latipes 101162114
8083 Xiphophorus maculatus 102226408 7897 Latimeria chalumnae 102366157
6239 Caenorhabditis elegans 185534 10090 Mus musculus 20669
7227 Drosophila melanogaster 39567 9598 Pan troglodytes 460869
10116 Rattus norvegicus 499593 7719 Ciona intestinalis ENSCING00000006005
10141 Cavia porcellus ENSCPOG00000008309 9361 Dasypus novemcinctus ENSDNOG00000019903
9371 Echinops telfairi ENSETEG00000006366 9595 Gorilla gorilla ENSGGOG00000027572
9315 Macropus eugenii ENSMEUG00000006246 30608 Microcebus murinus ENSMICG00000013774
9258 Ornithorhynchus anatinus ENSOANG00000004458 9986 Oryctolagus cuniculus ENSOCUG00000011135
9978 Ochotona princeps ENSOPRG00000017106 9813 Procavia capensis ENSPCAG00000003690
132908 Pteropus vampyrus ENSPVAG00000007702 42254 Sorex araneus ENSSARG00000006102
9823 Sus scrofa ENSSSCG00000011771 43179 Ictidomys tridecemlineatus ENSSTOG00000011011
99883 Tetraodon nigroviridis ENSTNIG00000003970 9478 Tarsius syrichta ENSTSYG00000001164
9739 Tursiops truncatus ENSTTRG00000004853 9615 Canis familiaris 488092
7070 Tribolium castaneum 663351 9606 Homo sapiens 6657
9544 Macaca mulatta 696412 7460 Apis mellifera 726150
28377 Anolis carolinensis ENSACAG00000002492 9646 Ailuropoda melanoleuca ENSAMEG00000011029
9358 Choloepus hoffmanni ENSCHOG00000012015 9483 Callithrix jacchus ENSCJAG00000008401
51511 Ciona savignyi ENSCSAVG00000009067 10020 Dipodomys ordii ENSDORG00000007481
9796 Equus caballus ENSECAG00000010653 9365 Erinaceus europaeus ENSEEUG00000013305
9685 Felis catus ENSFCAG00000029205 69293 Gasterosteus aculeatus ENSGACG00000006100
8049 Gadus morhua ENSGMOG00000019777 9785 Loxodonta africana ENSLAFG00000030155
59463 Myotis lucifugus ENSMLUG00000013015 13616 Monodelphis domestica ENSMODG00000021292
7757 Petromyzon marinus ENSPMAG00000009737 9305 Sarcophilus harrisii ENSSHAG00000007719
37347 Tupaia belangeri ENSTBEG00000007360 30538 Vicugna pacos ENSVPAG00000010334