Basic Information
Gene ID 562710
Gene Name sox1b; si:ch211-138g9.1
Full Name Transcription factor Sox-1b
Organism Danio rerio [7955]

Cross Reference
UniProt Q2Z1R2 UniGene Dr.52415
PDB NULL OMIM NULL
KEGG dre:562710 UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
NP_001032751 Gene3D G3DSA:1.10.30.10 IPR009071 36 115 5.90e-41 High mobility group box domain
NP_001032751 Pfam PF00505 IPR009071 37 105 1.10e-26 High mobility group box domain
NP_001032751 Pfam PF12336 IPR022097 106 206 5.30e-13 Transcription factor SOX
NP_001032751 ProSiteProfiles PS50118 IPR009071 37 105 0.00e-00 High mobility group box domain
NP_001032751 SMART SM00398 IPR009071 36 106 1.50e-30 High mobility group box domain
NP_001032751 SUPERFAMILY SSF47095 IPR009071 26 109 0.00e-00 High mobility group box domain

Pfam Annotation
Protein Pfam ID E.value Name Description
NP_001032751 PF00505 6.7e-27 HMG_box HMG (high mobility group) box
NP_001032751 PF12336 3.2e-13 SOXp SOX transcription factor
NP_001032751 PF09011 2.4e-11 HMG_box_2 HMG-box domain

Gene Ontology Annotation
Protein Entry Name Space Description
NP_001032751 GO:0006351 biological_process transcription, DNA-templated
NP_001032751 GO:0006355 biological_process regulation of transcription, DNA-templated
NP_001032751 GO:0005634 cellular_component nucleus
NP_001032751 GO:0003677 molecular_function DNA binding
NP_001032751 GO:0003700 molecular_function sequence-specific DNA binding transcription factor activity