===== Version History =====
==== 1.1.0 ====
=== Major new features ===
	*  Reimplemented ''gdata'' infrastructure. **All users should update to this version because it is no longer compatible with previous gdata format**. The data release have also been updated.
	*  More association tests included: a partial list of [[https://github.com/zhanxw/rvtests|''rvtests'']] and a ''QuickRegression'' routine.
	*  Development moved to github.com to take advantage of its "issue" tracker system for interaction with users.

<box 80% round blue|**__Note__**>
 Binary releases of ''SEQPower'' is no longer provided. Instead we release Docker images that supports all platforms where the Docker program is available.
</box>
==== 1.0.1 ====
Fix a critical regression bug that makes ''%%--%%proportion_detrimental'' crippled under default setting of ''%%--%%def_disruptive''

<box 80% round blue|**__Note__**>
 ''SEQPower'' does not provide "lite" version now -- ''spower simulate'' will be available by default.
</box>
==== 1.0.0 ====
=== Major new features ===
	*  Update default parameters to implement the European demographic model recently published [Gazave et al (2013)] for ''spower simulate''
	*  Add ''%%--%%replicate -1'' option to allow for calculating average power/sample size estimates over the entire input data file
	*  Add ''%%--%%missing_unlisted'' option to include a list of variants that mimics the exome chip design

=== Minor new features ===
	*  Implement the truncated selection coefficient distribution (Kyrukov et al 2009) model. See updated ''spower simulate -h''
	*  Color optimization for plots

==== 1.0rc1 ====
=== Major new features ===
	*  Command interface change, with improved naming convention for phenotype models
	*  Significant improvement on storage data format for haplotype pools
	*  Add ''spower simulate'' command. Now SEQPower has two versions: "Lite" (without this command) and "Full" (with this command).
	*  Add ''spower execute %%--%%plot'' command
	*  ''spower show'' is now compatible with SEQPower database input file

=== Minor new features ===
	*  Improved format for ''spower show'' output result
	*  Change output for ''GroupWrite'' to haplotypes; the minor allele count genotype output is still available with an additional switch ''%%--%%recode'' on
	*  Add ''%%--%%limit'' switch to restrict calculation to specified number of association units
	*  Add more simulated data set. Users need to completely update all haplotype pools data as the binary data format with release 1.0 beta are no longer supported
	*  Improved installation package for MacOSX

=== Maintenance ===
Various minor bug fixes

==== 1.0beta ====
First public release of SEQPower