• SEQPower input data
• SEQPower simulation of association data
• SEQPower power analysis results
• Graphic representation of power calculation results

Argument list

• Genotype simulation options
• Phenotype simulation options
• Analysis options
• Association tests options
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• LOGIT model
• PAR model
• LNR model
• ELNR model
• BLNR model

• Population genetics model based simulation
  • spower simulate command for forward time simulation of DNA sequences
• Data based simulation
• Direct sampling from real world data-set
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• Fixed effect vs. variable effects
• Protective, deleterious and neutral variants
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• Linear mean-shift model
• Extreme quantitative trait model
• Logit model of odds ratios
• Population attributable risk model
• Linear model with qualitative outcome
• Phenotype simulation for sequences drawn from haplotype pools
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• Analytic power and sample size calculation for case control design
• Analytic power and sample size calculation for quantitative traits design
• Empirical power and sample size calculations

• RVAM catalog
• Power comparison for RVAM

• Writing R extensions