BIRCHv3.60

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Contents

Installation

switch from newuser to newuser.py

Make a symbolic link from newuser to newuser.py. The main issue is getting newuser.py to find its dependencies, especially createluancher and vncsetup.

Python3 Compliance

Test for Python3 compliance of applications run by BioLegato, using Fedora31 VM as test platform.

fedora31 peacock
birch + +
birchadmin + +
bldna + +
blncbi + +
blnalign + +
blnfetch + +
blpalign + +
blprotein + +
blpfetch + +
blreads + +
bltable + +
bltree + +
blmarker + +


birch

BIRCH

BLAST+

FASTA

Upgraded to v36.3.8h</strike <strike>New wrapper script blfastaout.py,converts tabular output to a form compatible with blnfetch, blpfetch

blncbi

blnfetch, blpfetch

blreads

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