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These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 1038 cluster # 1038       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1038#0 length = 488 sequences # 2  
 consensus_1038#1 length = 455 sequences # 1  
consensusID : consensus_1038#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 488
fasta sequence 
                              [AGTATGGTGTAGTAGTATATAGAGATGATGGAAAAATAGAAAATTTTATAGAAAAGCCACAAGAATTTATTTCAAATAAAATTAATGCAGGCATGTATATTTTGAATCCAAGTGTCTTAAAAAGAATAGAATTGAAGCCAACAAGTATAGAAAAAGAAATTTTTCCGAATATGGCTCGTGATGGAGAATTATATGCAATGGAACTAACAGGATTCTGGATGGATGTTGGACAACCAAAAGATTTTCTTAAAGGAATGAGCATGTACCTGACATCTCTAAGACAAAAGTCTCCAGCAAAATTATATTCTGGTCCAGGAGTAGTAGGAAATGTCTTAATAGATGAAACAGCAAAGATTGGCAAAGATTGTAGAATAGGACCAAATGTTACAATTGGTCCTGNNGTTATTTTATCCGATGGTTGTTGCATTAAAAGAAGTACTATTCTTNNGGCAGCTATAATAAAAGAACACGCATGGCTGGATGGGTGC]

[+] EMBL BI516068             [AGTATGGTGTAGTAGTATATAGAGATGATGGAAAAATAGAAAATTTTATAGAAAAGCCACAAGAATTTATTTCAAATAAAATTAATGCAGGCATGTATATTTTGAATCCAAGTGTCTTAAAAAGAATAGAATTGAAGCCAACAAGTATAGAAAAAGAAATTTTTCCGAATATGGCTCGTGATGGAGAATTATATGCAATGGAACTAACAGGATTCTGGATGGATGTTGGACAACCAAAAGATTTTCTTAAAGGAATGAGCATGTACCTGACATCTCTAAGACAAAAGTCTCCAGCAAAATTATATTCTGGTCCAGGAGTAGTAGGAAATGTCTTAATAGATGAAACAGCAAAGATTGGCAAAGATTGTAGAATAGGACCAAATGTTACAATTGGTCCTGNNGTTATTTTATCCGATGGTTGTTGCATTAAAAGAAGTACTATTCTTNNGGCAGCTATAATAAAAGAACACGCATGGCTGGATGGGTGC]
[+] EMBL BI512271             [AGTATGGTGTAGTAGTATATAGAGATGATGGAAAAATAGAAAATTTTATAGAAAAGCCACAAGAATTTATTTCAAATAAAATTAATGCAGGCATGTATATTTTGAATCCAAGTGTCTTAAAAAGAATAGAATTGAAGCCAACAAGTATAGAAAAAGAAATTTTTCCGAATATGGCTCGTGATGGAGAATTATATGCAATGGAACTAACAGGATTCTGGATGGATGTTGGACAACCAAAAGATTTTCTTAAAGGAATGAGCATGTACCTGACATCTCTAAGACAAAAGTCTCCAGCAAAATTATATTCTGGTCCAGGAGTAGTAGGAAATGTCTTAATAGATGAAACAGCAAAGATTGGCAAAGATTGTAGAATAGGACCAAATG                                                                                                        ]




>consensus_1038#0
AGTATGGTGTAGTAGTATATAGAGATGATGGAAAAATAGAAAATTTTATAGAAAAGCCAC
AAGAATTTATTTCAAATAAAATTAATGCAGGCATGTATATTTTGAATCCAAGTGTCTTAA
AAAGAATAGAATTGAAGCCAACAAGTATAGAAAAAGAAATTTTTCCGAATATGGCTCGTG
ATGGAGAATTATATGCAATGGAACTAACAGGATTCTGGATGGATGTTGGACAACCAAAAG
ATTTTCTTAAAGGAATGAGCATGTACCTGACATCTCTAAGACAAAAGTCTCCAGCAAAAT
TATATTCTGGTCCAGGAGTAGTAGGAAATGTCTTAATAGATGAAACAGCAAAGATTGGCA
AAGATTGTAGAATAGGACCAAATGTTACAATTGGTCCTGNNGTTATTTTATCCGATGGTT
GTTGCATTAAAAGAAGTACTATTCTTNNGGCAGCTATAATAAAAGAACACGCATGGCTGG
ATGGGTGC

consensusID : consensus_1038#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence 
                              [GGACCAAATGTTACAATTGGTCCTGGTGTTATTTTATCCGATGGTTGTTGCATTAAAAGAAGTACTATTCTTAAGGCAGCTATAATAAAAGAACACGCATGGCTGGATGGGTGCATTGTGGGCTGGAAAAGTGTTGTAGGACGTTGGGTACGAATGGAAGGTACTACAGTACTTGGTGAAGATGTAATTGTTAAGGATGAATTATATATTAATGGTGGTCAAGTTTTACCTCACAAGAATATTTCCAGTTCTGTACCAGAACCACAAATAATCATGTGACCAAAAATAATATCTTAAAGTACACATCGAACATGATAAATGACCAAATTATGAAACATTTTATAAATAAACTTTTTATCAGCTTTTTTAATCATATGTAAATTGATGTTCATTATATATTCGTTTATATTTTTTTTTACATTTACAATTCAAATAAGCTTTATTGGCAGTCCTCG]

[+] EMBL BI511385             [GGACCAAATGTTACAATTGGTCCTGGTGTTATTTTATCCGATGGTTGTTGCATTAAAAGAAGTACTATTCTTAAGGCAGCTATAATAAAAGAACACGCATGGCTGGATGGGTGCATTGTGGGCTGGAAAAGTGTTGTAGGACGTTGGGTACGAATGGAAGGTACTACAGTACTTGGTGAAGATGTAATTGTTAAGGATGAATTATATATTAATGGTGGTCAAGTTTTACCTCACAAGAATATTTCCAGTTCTGTACCAGAACCACAAATAATCATGTGACCAAAAATAATATCTTAAAGTACACATCGAACATGATAAATGACCAAATTATGAAACATTTTATAAATAAACTTTTTATCAGCTTTTTTAATCATATGTAAATTGATGTTCATTATATATTCGTTTATATTTTTTTTTACATTTACAATTCAAATAAGCTTTATTGGCAGTCCTCG]




>consensus_1038#1
GGACCAAATGTTACAATTGGTCCTGGTGTTATTTTATCCGATGGTTGTTGCATTAAAAGA
AGTACTATTCTTAAGGCAGCTATAATAAAAGAACACGCATGGCTGGATGGGTGCATTGTG
GGCTGGAAAAGTGTTGTAGGACGTTGGGTACGAATGGAAGGTACTACAGTACTTGGTGAA
GATGTAATTGTTAAGGATGAATTATATATTAATGGTGGTCAAGTTTTACCTCACAAGAAT
ATTTCCAGTTCTGTACCAGAACCACAAATAATCATGTGACCAAAAATAATATCTTAAAGT
ACACATCGAACATGATAAATGACCAAATTATGAAACATTTTATAAATAAACTTTTTATCA
GCTTTTTTAATCATATGTAAATTGATGTTCATTATATATTCGTTTATATTTTTTTTTACA
TTTACAATTCAAATAAGCTTTATTGGCAGTCCTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1038#0      -AGTATGGTGTAGTAGTATATAGAGATGATGGAAAAATAGAAAATT-TTATAGAAAAGCC 58
consensus_1038#1      GGACCAAATGTTACAATTGGTCCTGGTGTTATTTTATCCGATGGTTGTTGCATTAAA--- 57
                              ***   * *   *   * ** *     *   **   ** **  *  ***   

consensus_1038#0      ACAAGAATTTATTTCAAATAAAAT-TAATGCAGGCATGTATATT-TTGAATCCAAGTGTC 116
consensus_1038#1      AGAAGTACTATTCTTAAGGCAGCTATAATAAAAGAACACGCATGGCTGGATGGGTGCATT 117
                      * *** * *  * * **   *  * ****  * * *     **   ** **    *  * 

consensus_1038#0      TTAAAA-AGAATAGAATTGAAGCCAACAAGTATAGAAAAAGAAATTTTTCCGAATATGGC 175
consensus_1038#1      GTGGGCTGGAAAAGTGTTGTAGGACGTTGG-GTACGAATGGAAGGT------ACTACAGT 170
                       *      *** **  *** **       *  **  **  ***  *      * **  * 

consensus_1038#0      TCGTGATGGAGAATTATATGCAATGGAACTAACAGGATTCTGGATGGATGTTGGACAACC 235
consensus_1038#1      ACTTGGTGAAGATGTAATTGTTAAGGAT------GAATTATATATTAATGGTGGTCAAGT 224
                       * ** ** ***  **  **  * ***       * *** *  **  *** *** ***  

consensus_1038#0      AAAAGATTTTCTTAAAGGAATGAGCATGTACCTGACATCTCTAAGACAAAAGTCTCCAGC 295
consensus_1038#1      T-----TTACCTCACAAGAATATTTCCAGTTCTG---TACCAGAACCACAAATAATCATG 276
                            **  ** * * ****          ***   *  *  *  ** ** *   **  

consensus_1038#0      AAAATTATATTCTGGTCCAGGAGTAGTAGGAAATGTCTTAATAGATGAAACAGCAAAGAT 355
consensus_1038#1      TGACCAAAAATAATATCTTAAAGTAC------ACATCGAACATGATAAATGACCAAA--T 328
                        *   * * *    **    ****       *  **  *   *** **  * ****  *

consensus_1038#0      TGGCAAAGATTGTAGAATAGGACCAAATGTTACAATTGGTCCTGNNGTTATTTTATCCGA 415
consensus_1038#1      TATGAAACATTTTATAAATAAACT---TTTTATCAGCTTTTTTAATCATATGTAAATTGA 385
                      *   *** *** ** **    **    * ***  *    *  *     *** * *   **

consensus_1038#0      TGGTTGTTGCATTAAAAGAAGTACTATTCTTNNGGCAGCTATAATAAAAGAACACGCATG 475
consensus_1038#1      TGTTCATTATAT--ATTCGTTTATATTTTTTTTTACATTTACAATTCAA--ATAAGCTTT 441
                      ** *  **  **  *      **   ** **    **  ** ***  **  * * ** * 

consensus_1038#0      GCTGGATGGGTGC- 488
consensus_1038#1      ATTGGCAGTCCTCG 455
                        ***  *    *


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)