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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 612 fasta sequence
[AGTGTGTCGTTAGGAAGTCGCAATATAGAAATTAAACGGAATATTTTATTTTCCTCAGAATTTATTTTAAATCATTTTGTGCATTAAAAACAGACAAAACAAATCAAAAAAATTTATTCGAATGTGCGTAAAGAATAAAATCAGTGAAAAATAATAAAAAGGTGAAAGAAAAAGAAAAATAAAGAGTTTGAATCGGAAAGTGCGTCATTTGCAACTATCGGCTTGAATTGTTGAGGTAGTGTTCGAATGCAAGTCGTCCTTGGTTCTACTGAAACGCAAGGTTAGGAAAAAATGAGAATGGAGCCGGCATGTCCTATGTCTCCTGGGAAGGAGAAAGAAGATGCTACCGCGGTTTGCAAGGAATCATGCTTTGTTGTAGCCAATGGCAATTCTTGCTTCTGGAATATTCTTGATCCATACGCATGGTTTAATCCTGATAGACTCAATCCAAAAGTGGCAGCTTTAATTTATTGGCGTGATCCAAAGAAATCAGGCCCCGTGTTCGGCTGCATACTTGGCGTGCTCCTCTCGTTGGCCTACTTCAGTCTGATAAGCGTTCTTGCTTATTTGTCTCTTCTTATCCTCACTGGTACCATTGCTTTTAGGATAAGA]
[+] EMBL BI506329 [AGTGTGTCGTTAGGAAGTCGCAATATAGAAATTAAACGGAATATTTTATTTTCCTCAGAATTTATTTTAAATCATTTTGTGCATTAAAAACAGACAAAACAAATCAAAAAAATTTATTCGAATGTGCGTAAAGAATAAAATCAGTGAAAAATAATAAAAAGGTGAAAGAAAAAGAAAAATAAAGAGTTTGAATCGGAAAGTGCGTCATTTGCAACTATCGGCTTGAATTGTTGAGGTAGTGTTCGAATGCAAGTCGTCCTTGGTTCTACTGAAACGCAAGGTTAGGAAAAAATGAGAATGGAGCCGGCATGTCCTATGTCTCCTGGGAAGGAGAAAGAAGATGCTACCGCGGTTTGCAAGGAATCATGCTTTGTTGTAGCCAATGGCAATTCTTGCTTCTGGAATATTCTTGATCCATACGCATGGTTTAATCCTGATAGACTCAATCCAAAAGTGGCAGCTTTAATTTATTGGCGTGATCCAAAGAAATCAGGCCCCGTGTTCGGCTGCATACTTGGCGTGCTCCTCTCGTTGGCCTACTTCAGTCTGATAAGCGTTCTTGCTTATTTGTCTCTTCTTATCCTCA ]
[+] EMBL BI504639 [ AAAATCAGTGAAAAATAATAAAAAGGTGAAAGAAAAAGAAAAATAAAGAGTTTGAATCGGAAAGTGCGTCATTTGCAACTATCGGCTTGAATTGTTGAGGTAGTGTTCGAATGCAAGTCGTCCTTGGTTCTACTGAAACGCAAGGTTAGGAAAAAATGAGAATGGAGCCGGCATGTCCTATGTCTCCTGGGAAGGAGAAAGAAGATGCTACCGCGGTTTGCAAGGAATCATGCTTTGTTGTAGCCAATGGCAATTCTTGCTTCTGGAATATTCTTGATCCATACGCATGGTTTAATCCTGATAGACTCAATCCAAAAGTGGCAGCTTTAATTTATTGGCGTGATCCAAAGAAATCAGGCCCCGTGTTCGGCTGCATACTTGGCGTGCTCCTCTCGTTGGCCTACTTCAGTCTGATAAGCGTTCTTGCTTATTTGTCTCTTCTTATCCTCACTGGTACCATTGCTTTTAGGATAAGA]
consensusID : consensus_1050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[AACCGGAAAAAAAAGAAGAATGTGTAAGTGAAAATGTGCTTGCTGATATAGAGAAAAAGGAACGAATCAGTGCAACAGAAACTGGAGAATCTGAATTTGAATCAGAAGTTGAGGTATCTCCAGTAAAAAGTTTCAAATCAGTAAAACAGGAAGTGAAAAGAGAACCAGTGGAAGAAGTGGAAATTGCACCGAAGGAGATATTTAGTAGTATGGGAATAGACGCATGGTTTAATCCTGATAGACTCAATCCAAAAGTGGCAGCTTTAATTTATTGGCGTGATCCAAAGAAATCAGGCCCCGTGTTCGGCTGCATACTTGGCGTGCTCCTCTCGTTGGCCTACTTCAGTCTGATAAGCGTTCTTGCTTATTTGTCTCTTCTTATCCTCACTGGTACCATTGAGGATAAGAAG]
[+] EMBL BI504787 [AACCGGAAAAAAAAGAAGAATGTGTAAGTGAAAATGTGCTTGCTGATATAGAGAAAAAGGAACGAATCAGTGCAACAGAAACTGGAGAATCTGAATTTGAATCAGAAGTTGAGGTATCTCCAGTAAAAAGTTTCAAATCAGTAAAACAGGAAGTGAAAAGAGAACCAGTGGAAGAAGTGGAAATTGCACCGAAGGAGATATTTAGTAGTATGGGAATAGACGCATGGTTTAATCCTGATAGACTCAATCCAAAAGTGGCAGCTTTAATTTATTGGCGTGATCCAAAGAAATCAGGCCCCGTGTTCGGCTGCATACTTGGCGTGCTCCTCTCGTTGGCCTACTTCAGTCTGATAAGCGTTCTTGCTTATTTGTCTCTTCTTATCCTCACTGGTACCATTGAGGATAAGAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1050#0 AGTGTGTCGTTAGGAAGTCGCAATATAGAAATTAAACGGAATATTTTATTTTCCTCAGAA 60
consensus_1050#1 ------------------------------------------------------------
consensus_1050#0 TTTATTTTAAATCATTTTGTGCATTAAAAACAGACAAAACAAATCAAAAAAATTTATTCG 120
consensus_1050#1 ------------------------------------------------------------
consensus_1050#0 AATGTGCGTAAAGAATAAAATCAGTGAAAAATAATAAAAAGGTGAAAGAAAAAGAAAAAT 180
consensus_1050#1 ----------------------------------------------AACCGGAAAAAAAA 14
* * *****
consensus_1050#0 AAAGAGTTTGAATCGGAAAGTGCGTCATTTGCAACTATCGGCTTGAATTGTTGAGGTAGT 240
consensus_1050#1 GAAGAATGTGTAAGTGAAAATGTGC---TTGCTGATATAGAGAAAAAGGAACGAATCAGT 71
**** * ** * **** ** * **** *** * ** ** ***
consensus_1050#0 GTT-CGAATGCAAGTCGTCCTTGGTTCTACTGAAACGCAAGGTTAGGAAAAAATGAGAAT 299
consensus_1050#1 GCAACAGAAACTGGAGAATCTGAATT----TGAATCA-GAAGTTGAGGTATCTCCAGTAA 126
* * * * * ** ** **** * * *** * * ** *
consensus_1050#0 GGAGCCGGCATGTCCTATGTCTCCTGGGAAGGAGAAAGAAGATGCTACCGCGGTTTGCAA 359
consensus_1050#1 AAAGTTT-CAAATCA---GTAAAACAGGAAGTGAAAAGAGAAC-------CAG--TGGAA 173
** ** ** ** ***** ***** * * * ** **
consensus_1050#0 GGAATCATGCTTTGTTGTAGCCAATGGCAATTCTTGCTTCTGGAATATTCTTGATCCATA 419
consensus_1050#1 GAAGTGGAA----ATTGCA-CCGAAGGAGATATTT--------AGTAGTATGGGAATAGA 220
* * * *** * ** * ** ** ** * ** * * * * *
consensus_1050#0 CGCATGGTTTAATCCTGATAGACTCAATCCAAAAGTGGCAGCTTTAATTTATTGGCGTGA 479
consensus_1050#1 CGCATGGTTTAATCCTGATAGACTCAATCCAAAAGTGGCAGCTTTAATTTATTGGCGTGA 280
************************************************************
consensus_1050#0 TCCAAAGAAATCAGGCCCCGTGTTCGGCTGCATACTTGGCGTGCTCCTCTCGTTGGCCTA 539
consensus_1050#1 TCCAAAGAAATCAGGCCCCGTGTTCGGCTGCATACTTGGCGTGCTCCTCTCGTTGGCCTA 340
************************************************************
consensus_1050#0 CTTCAGTCTGATAAGCGTTCTTGCTTATTTGTCTCTTCTTATCCTCACTGGTACCATTGC 599
consensus_1050#1 CTTCAGTCTGATAAGCGTTCTTGCTTATTTGTCTCTTCTTATCCTCACTGGTACCATTG- 399
***********************************************************
consensus_1050#0 TTTTAGGATAAGA-- 612
consensus_1050#1 ----AGGATAAGAAG 410
*********
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |